Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq42 260 2e-64 seq4 147 3e-30 >seq42 Length=298824 Score = 260 bits (288), Expect = 2e-64 Identities = 1185/1829 (65%), Gaps = 81/1829 (4%) Strand=Plus/Minus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605 || ||||| ||||||| |||||| | ||||||| | || |||| | ||| Sbjct 243394 TACTTTGGCTTCAAGACTCTCGAGCGATCATACCTCCTCCGCCTCAATGG---CAAGATC 243338 Query 111606 ---GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATT 111662 ||| |||||| ||||| | ||||| || || |||| || || || |||||||| Sbjct 243337 TGCGAACGCCCACAACACATGATTATGCGAGTAGCAGTCGGCATTCACGGTGAAGATATC 243278 Query 111663 GATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATG-TTCATCCACGCAACACC 111721 || ||| | ||||||||| | |||||||| | || |||| || || | || Sbjct 243277 GAGGCTGCGATTGAGACATACAATCTGATGTCCCA-GAAGTGCTTCACGCATGCTTCCCC 243219 Query 111722 AACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAA 111781 ||| |||||| |||||||| ||| | ||||| | || ||||||||| | | | Sbjct 243218 AACTCTCTTCGCTGCTGGTACTCCACAAGCCCAACTCTCTTCATGTTTCCTTGTCGACAT 243159 Query 111782 CAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA----TGTGCCCAAATCT 111837 |||||||| ||| | || || |||| ||| | |||| || ||| || | Sbjct 243158 GAAGGAGGACAGTATCGACGGTATCTACGACAC----ATTGAAGACTTGCGCCATGATTT 243103 Query 111838 CAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACA-AGTCTCGT 111896 | ||| |||||||| || || | || | ||| || | || | | || || Sbjct 243102 CCAAGAATGCTGGTGGAATTGGCCTCAACGTTCATCGAATCCGCGCTACCGGAGCCTAC- 243044 Query 111897 ATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCC 111956 ||| ||| ||||||||| | || | || || | || ||||| || || || ||| | Sbjct 243043 ATTGCAGGAACAAATGGTAACTCGAACGGCATCGTCCCCATGCTCCGAGTCTTCAACAAC 242984 Query 111957 ACAGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAGGGATC------TATCGCAGTCTAT 112010 || || || || || |||||| ||| | |||| || | | |||| ||||| Sbjct 242983 ACTGCTCGTTACGTTGACCAAGGTGG---TAACAAGCGACCAGGTGCTTTCGCTATCTAT 242927 Query 112011 CTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGAT 112070 ||||||||||||||||| ||| || | |||| |||||| | || || || || | Sbjct 242926 CTTGAGCCATGGCACGCCGATGTCTTCGAGTACCTTGATCTTCGAAAGAATCACGGCAAG 242867 Query 112071 GAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAG 112130 ||||||| || || |||||||||| ||| || |||||||| ||||| ||||||||| Sbjct 242866 GAGGAGGTCCGAGCTCGTGATCTCTTCTACGCCCTGTGGATTCCTGATCTTTTCATGAAG 242807 Query 112131 AGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCC 112190 ||||||| ||| |||| | ||| || | | || || | || || || | | Sbjct 242806 CGAGTTGAAAAGAATGGCGAGTGGACTTTGATGTGCCCCAATGAGTGCCCAGGCTTGGCT 242747 Query 112191 GATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCG 112250 |||| | || || || || || || |||||| |||| ||| ||| || || | Sbjct 242746 GATGTCTATGGCGATGAATTCGAGGCTCTCTACGAGCAGTATGAGCGCGAAGGTAAGG-G 242688 Query 112251 ACTGC--GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAG 112307 | || ||| | | || || | | | ||| | | || || || |||| |||||| Sbjct 242687 TC-GCAAGACCAT-CAAGGCGCAAAAGCTCTGGTACTCCATCCTGGAGGCTCAGACCGAG 242630 Query 112308 ACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAAT 112367 ||||| | || | ||||||||||| || || || ||| |||||| || || |||||| Sbjct 242629 ACTGGCAATCCCTTCATGCTTTACAAGGATGCTTGCAACAGAAAGAGCAACCAGAAGAAT 242570 Query 112368 TTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGAT 112427 | ||| ||| || || |||||||| || || || | || | | |||| Sbjct 242569 CTCGGTACCATCCGAAGCTCGAACCTCTGCACTGAGATTGTTGAGTACTGTGCTCCAGAT 242510 Query 112428 GAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACA 112487 ||| || || || ||| | || ||| | || || || | ||||| || || ||| Sbjct 242509 GAGGTTGCCGTCTGCAACTTGGCTTCACTTGCCCTTCCTACCTATGTCGA--CATGAACA 242452 Query 112488 AAG--ACATTTGATTATGAAAAACTCCACGAAGT-TACGAAAAC--TGTCACAAAAAACC 112542 | | || | ||| | | | ||| |||||||| | | || | |||| || ||| Sbjct 242451 ACGGCACTTATGACTTCCAGAGACTTCACGAAGTCTGCCAAGTCGTTGTC---AAGAACT 242395 Query 112543 TAAACAGAGTTATTGATAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATG 112601 | |||| | |||||| || | |||||| ||| || | | || | || | Sbjct 242394 TGAACAAGATCATTGATGTCAACTATTACCCTGTTCCCGAAGCCAAGAGAAGC-AACTTC 242336 Query 112602 AGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGT 112658 | ||||| || || | | |||||||| ||||| || |||| ||| | |||| || Sbjct 242335 CGCCACCGACCTATCGCCGTTGGTGTCCAGGGTCTTGCTGATGCTTTCTTGGCTCTTCGT 242276 Query 112659 CGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATG 112718 | | |||| || || || || ||| | |||| | || || ||||| || Sbjct 242275 CTTC---CATTCGACTCTCCAGAGGCCAAGCACCTCAACATTCAAATCTTCGAGACCATC 242219 Query 112719 TATCACGCCGCTCTTGAGGC--GAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAA 112776 || || ||||| || || |||| ||| | || |||||||||| | ||||| | Sbjct 242218 TACCATGCCGCACTCACTGCTTCAGTT--GAGCTTGCCAAGGTTGATGGCACTTATGAGA 242161 Query 112777 CCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAG 112835 | |||||||||||||| || || |||||| | | | || | ||||||||||| || | Sbjct 242160 CATTTGAGGGTTCTCCTGCCTC-CAAGGGCGAGTTGCAGTATGATATGTGGG-GTGTTAC 242103 Query 112836 ACCAA-GCTTCACTACGACTGGGAC-GCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTC 112893 |||| || || || |||||| ||| | ||| | |||||| | | ||||||| Sbjct 242102 TCCAACAGATCTCTGGGATTGGGACAGCT-TGAAGCAGAAAATCAAGCAACATGGTCTTC 242044 Query 112894 GTAACAGTCTT--TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTA 112950 | || || ||| ||| | || || |||||||| ||| |||| |||| |||||| | Sbjct 242043 GCAATAG-CTTGCTTG-TCGCTCCTATGCCAACTGCCAGCACCAGTCAAATTCTTGGCT- 241987 Query 112951 ATAATGAATGCTTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGA 113009 ||||| |||||||| || || ||| | |||||||| ||| | | || || || Sbjct 241986 TCAATGAGTGCTTTGAGCCATATACGTCCAACATCTACTCT-CGTCGTGTTCTTGCTGGC 241928 Query 113010 GAGTTTGTGATTGTCAA--CAAGCAT-CTCGTGGATGACCTCAAAGAGATTGGTCTCTGG 113066 ||||| | ||||| || | | ||| |||| || || || ||||||||| Sbjct 241927 GAGTTCCAAGTCGTCAACCCATGGTTGCTCAAGGAT---CTTGTTGACATGGGTCTCTGG 241871 Query 113067 TCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGAT 113126 || | | |||||| | | || | | ||||| || ||||| || || | Sbjct 241870 TCTGACAACATGAAGAACCGTATCATTGCCGATGGTGGATCGATTCAGAACATCCCCAAC 241811 Query 113127 ATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATG 113184 || |||| ||| || ||| | ||| || |||||||||| ||| ||| | Sbjct 241810 ATCCCAGCTGATATCAAGGCTCTTTACAAGACCGTTTGGGAAATCTCACAGCGAACCA-- 241753 Query 113185 TCATTGACATGGCCGCAGATCGTGGTCGCTT-CATTGATCAAAGTCAAAGTATGAATCTA 113243 || | | |||||||| || |||||| |||| |||||| ||| ||| ||||| | Sbjct 241752 TCGTCCAAATGGCCGCTGACCGTGGT-GCTTACATTGACCAATCACAATCGATGAACATT 241694 Query 113244 TTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAG 113303 |||| | ||| || ||| |||| || | ||||||| | | |||||| | Sbjct 241693 CACATGAAGGATCCCACAATGGGCAAGATCACCAGTATGCACTTCGCTGGCTGGAAGTTG 241634 Query 113304 GGTCTCAAAACGGGGATGTATTACCTCCG 113332 ||||| ||||| || ||||| || ||||| Sbjct 241633 GGTCTGAAAACTGGCATGTACTATCTCCG 241605 >seq4 Length=1888314 Score = 147 bits (162), Expect = 3e-30 Identities = 170/224 (76%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168 |||||||||||| | ||||| || || |||||| | |||||| || | |||| | | Sbjct 1224656 AGTTCCATGTATCAAGAAGAAGGCCGACTGGGCTGTCAAGTGGATTCAAGACAAGAACTC 1224597 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 | | |||||| | || ||| ||||||| || || ||||||||||||||| ||||| Sbjct 1224596 -TACATTTGCTCAACGTCTCGTCGCATTCGCCGCCGTCGAGGGTATCTTCTTCAGTGGTT 1224538 Query 102229 CCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 102287 ||||| ||| | || | ||| | |||||||| ||||| ||| | ||||| ||||||| Sbjct 1224537 CCTTC-GCGTCCATCTTCTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACCTTCTCC 1224479 Query 102288 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 || || || ||||||||||||||||| |||||| || ||||| Sbjct 1224478 AATGAACTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGC 1224435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741849091120