Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq42 187 3e-42 seq4 129 7e-25 seq7 93.3 5e-14 seq5 86.0 7e-12 >seq42 Length=298824 Score = 187 bits (206), Expect = 3e-42 Identities = 1168/1844 (63%), Gaps = 63/1844 (3%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || ||||| ||||| || ||||| ||||| |||||| | | ||||| | | Sbjct 241605 CGGAGATAGTACATGCCAGTTTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTGGTG 241664 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 | ||| | ||| ||| || ||| | ||||||||| || || || || ||| | Sbjct 241665 ATCTTGCCCATTGTGGGATCCTTCATGTGAATGTTCATCGATTGTGATTGGTCAATGTAA 241724 Query 109528 CGACCACGATCAGCCGCCATGT---CGATGATACACTTTTGGCTAATTTCCCAGACAGTC 109584 |||||| ||||| ||||| | ||||| | | || | | |||||||| || ||| Sbjct 241725 GCACCACGGTCAGCGGCCATTTGGACGATGGTTCGCTGTGAG---ATTTCCCAAACGGTC 241781 Query 109585 TTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCC 109644 ||||| | | |||||||||| | || |||| |||||| ||||| || |||||| | Sbjct 241782 TTGTAAAGAGCCTTGATATCAGCTGGGATGTTGGGGATGTTCTGAATCGATCCACCATCG 241841 Query 109645 TTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGAT-CGTCAAC 109703 | || | | |||||| | | ||||||||||| | | |||| | | | | Sbjct 241842 GCAATGATACGGTTCTTCATGTTGTCAGACCAGAGACCCATGTCAACAAGATCCTTGAGC 241901 Query 109704 AA-GATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAG 109762 || ||| |||||| || || || |||||||| || || ||||||||| | Sbjct 241902 AACCATG--GGTTGACGACTTGGAACTCGCCAGCAAGAACACGACGAGAGTAGATGTTGG 241959 Query 109763 TCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCA 109822 ||| || || || || ||||||||| ||| || ||||| ||| || || |||| Sbjct 241960 ACGTATATGGCTCAAAGCACTCATTGAAGCCAAGAATTTGACTGGTGCTGGCAGTTGGCA 242019 Query 109823 TGGGAGCCATGAGAAGACTGTTTCGGAGACC---CTTCGTCTTTACCCGC-TCACGCATT 109878 | ||||| | || | || || || ||||| | | | || | || ||| || Sbjct 242020 TAGGAGCGACAAGCAAGCTATTGCGAAGACCATGTTGCTTGATTTTCTGCTTCAAGC--- 242076 Query 109879 GCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGT 109938 ||||||||| | || | | | ||| | || |||||||||| || | Sbjct 242077 -TGTCCCAATCCCAGAGATCTGT---TGGAGT---AACACCCCACATATCATACTGCAAC 242129 Query 109939 ACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAAC 109998 | |||| | ||||||||||||| || |||| || | || ||||||| ||| | | Sbjct 242130 TCGCCCTTGGAGGCAGGAGAACCCTCAAATGTCTCATAAGTGCCATCAACCTTGGCAAGC 242189 Query 109999 TCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGG 110058 || |||||| ||||| ||||| || || ||||| || || ||| || | | | Sbjct 242190 TCAACTGAAGCAGTGAGTGCGGCATGGTAGATGGTCTCGAAGATTTGAATGTTGAGGTGC 242249 Query 110059 CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG--AATAAACACATCCGCTAGACCCT 110116 | |||| | ||||||| ||||||| | | || || ||| |||| || ||||||| Sbjct 242250 TTGGCCTCTGGAGAGTCGAATGGAAGACGA-AGAGCCAAGAAA-GCATCAGCAAGACCCT 242307 Query 110117 GAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTC---TACGG 110173 | ||||| | | || || || || | ||| || || | ||| || | Sbjct 242308 GGACACCAACGGCGATAGGTCGGTGGCGGAAGTT---GCTTCTCTTGGCTTCGGGAACAG 242364 Query 110174 GGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCG-TGATTTCA 110232 ||||| ||||| || |||| | || | ||||| | || | ||| | || ||| Sbjct 242365 GGTAATAGTTGACATCAATGATCTTGTTCAAGTTCTT-GACAACGACTTGGCAGACTTCG 242423 Query 110233 TGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATA 110292 || ||| | | | | || | || | | | | | |||||| | || || |||| Sbjct 242424 TGAAGTCTCTGGAAGTCATAAGTGCCGTTGTTCATGTCGACATAGGTAGGAAGGGCAAGT 242483 Query 110293 GACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACAC 110352 || || | ||||| || | | ||| ||| | ||| || | ||| || || || Sbjct 242484 GAAGCCAAGTTGCAGACGGCAACCTCATCTGGAGCACAGTACTCAACAATCTCAGTGCAG 242543 Query 110353 AAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCC 110412 | ||| || || ||| ||| | |||||||| || || |||||| |||||| Sbjct 242544 AGGTTCGAGCTTCGGATGGTACCGAGATTCTTCTGGTTGCTCTTTCTGTTGCAAGCATCC 242603 Query 110413 TTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-C 110471 || || |||||| | || | ||||| || ||||| | || || |||| | ||| | | Sbjct 242604 TTGTAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAGCCTCCAGGATGGAGTACCAGAGC 242663 Query 110472 ATCGGCGGCGGGGACAG--TTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAG 110529 | || || || | ||||| | | |||||| ||| |||| ||| | Sbjct 242664 TTTTGC-GCCTTGATGGTCTTGCG--ACCCTTACCTTCGCGCTCATACTGCTCGTAGAGA 242720 Query 110530 TCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGC-CTTGTCGGGACAGAAGAG 110588 |||| ||||| | || || ||||||| | | ||| || || | ||| || | | Sbjct 242721 GCCTCGAATTCATCGCCATAGACATCAGCCA-AGCCTGGGCACTCATTGGGGCACATCAA 242779 Query 110589 GGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGA 110648 | ||| | ||| || ||||| | ||||||||| || ||||||||||||| || | Sbjct 242780 AGTCCACTCGCCATTCTTTTCAACTCGCTTCATGAAAAGATCAGGAATCCACAGGGCGTA 242839 Query 110649 GAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTC 110708 ||| || ||||| || |||| || | || || || || || || | | || Sbjct 242840 GAAGAGATCACGAGCTCGGACCTCCTCCTTGCCGTGATTCTTTCGAAGATCAAGGTACTC 242899 Query 110709 CATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA-------TGGATCCCTTACGAC 110761 | || ||| | ||||||||| || ||||||| ||||| ||| || ||| || Sbjct 242900 GAAGACATCGGCGTGCCATGGCTCAAGATAGATAGCGAAAGCACCTGG-TCGCTTGTTAC 242958 Query 110762 GACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTC 110821 || | |||| ||| || || || ||| |||||||| | |||||| || | || | Sbjct 242959 CAC---CTTGGTCAACGTAACGAGCAGTGTTGTTGAAGACTCGGAGCATGGGGACGATGC 243015 Query 110822 CATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCG-TGGATA 110880 | | || | ||||||||| || ||| || | || || || ||| || | Sbjct 243016 CGTTCGAGTTACCATTTGTTCCTGCAATGTAGGCTCCGGTAGCGCGGAT-TCGATGAACG 243074 Query 110881 TGCATACCAATACCACCCGCCCACTTACTAAT--TTGTGCACACTCTGTGAGTGTACCAT 110938 | | ||||| ||||| || ||| ||| | | ||| | ||| | | ||| | | Sbjct 243075 TTGAGGCCAATTCCACCAGCATTCTTGGAAATCATGGCGCA-AGTCT-TCAATGTGTCGT 243132 Query 110939 AAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGAC 110998 | ||||| || || || |||| || | | || || || ||||| | || | Sbjct 243133 AGATACCGTCGATACTGTCCTCCTTCATGTCGACAAGGAAACATGAAGAGAGTTGGGCTT 243192 Query 110999 GAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA-CAGACCTTGGGACATC 111057 | || || || ||| |||||| || || | ||||| |||| || | ||||||||| Sbjct 243193 GTGGAGTACCAGCAGCGAAGAGAGTTGGGGAAGCATGCGTGAAGCACTTC-TGGGACATC 243251 Query 111058 TTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGC 111117 |||||||| || | || | | ||||| ||||||||| || | || |||||| Sbjct 243252 AGATTGTATGTCTCAATCGCAGCCTCGATATCTTCACCGTGAATGCCGACTGCTACTCGC 243311 Query 111118 ATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTC 111177 || | ||| | ||| || |||| | ||| |||| | || | ||||| | Sbjct 243312 ATAATCATGTGTTGTGGGCGTTCGCAGATCTTGCCATTGAGGCGGAGGAGGTATGATCGC 243371 Query 111178 TCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 || || ||||||| ||||||||| ||| |||||| || || Sbjct 243372 TCGAGAGTCTTGAAGCCAAAGTATTGGTAATTGAAATCTCGGTC 243415 >seq4 Length=1888314 Score = 129 bits (142), Expect = 7e-25 Identities = 335/498 (67%), Gaps = 17/498 (3%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 |||||||| || | ||| || ||||| || ||||| ||| |||| |||||||| |||||| Sbjct 1224147 TAGTCACCAACGCGCTTCTCAAAGAAGTTAGTCTTGCCAGCGAGCGAGATGTTCTCCATA 1224206 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCAGAAGACG 119326 |||||||| || || || || ||| | | ||| || | || ||||| Sbjct 1224207 AAGTCAAATGGGTTGGCAGACTTGTAGACCTTCTCATTG-CCGAGGGCAAGAAGCAGACG 1224265 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 ||| | ||| ||||||| |||| |||| | ||| ||||| || | ||| ||| Sbjct 1224266 ATCAGCGACGAACTCGATGTATTGCTTCATCAGATTCGAGTTCATGCCAAGGAGTGCACA 1224325 Query 119387 CGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGTG 119446 || ||||| || | ||| | | ||| ||||| |||||||| | | || | || Sbjct 1224326 AGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCTTCGGTAATGACGTCTTG 1224385 Query 119447 AATAGTTTCTGTCGATGGTTTGTTTCTCAAG--AGTTTAAACAACTCTACGGCAAATTCT 119504 | || || | ||| || ||||| || | | || | | ||||| || Sbjct 1224386 GACAGCTTGCTTGCTTGGGCGGTGCTTCAAGTGAGAGAAGAGAAGGCAA--GCAAAGTCG 1224443 Query 119505 TGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGT 119564 || || || || || ||||||||||| ||||| |||| ||| |||| ||| || Sbjct 1224444 GTGTGGAGACCCTCGTCACGAGAGATGAGTTCATTGGAGAAGGTAAGACCAGCCATAAGA 1224503 Query 119565 CCTCTTTTCTTTAGCCAAAAGATGG-CACAAA--AACTTCCAGAAAAGAAGATGCCCTCC 119621 || | ||||| | ||| ||||||| | | || || ||| |||||||| ||||| Sbjct 1224504 CCACGCTTCTTCAACCAGAAGATGGACGCGAAGGAA---CCACTGAAGAAGATACCCTCG 1224560 Query 119622 ACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC--GAA-CCACTT 119677 || |||||| |||| ||||| | ||| ||| || ||| |||||| ||| |||||| Sbjct 1224561 ACGGCGGCGAATGCGACGAGACGTTGAGC-AAATGTAGAGTTCTTGTCTTGAATCCACTT 1224619 Query 119678 GAGAGCCCAGTTGGCCTT 119695 || |||||||| |||||| Sbjct 1224620 GACAGCCCAGTCGGCCTT 1224637 >seq7 Length=1615722 Score = 93.3 bits (102), Expect = 5e-14 Identities = 213/318 (67%), Gaps = 2/318 (1%) Strand=Plus/Minus Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 || || | |||||| || ||||||||||| | |||||| || || | ||| Sbjct 424099 TTGCCAATAGCGTCGATTTCATCGATGAAGATGATACATGGAGTATTCTTTCTCGCCATA 424040 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793 ||||| || || || || || |||||||| || ||||| || ||||| | | Sbjct 424039 GAAAAAAGATCTCGCACTCGTGAAGCACCAACACCAACAAACATTTCCACGAACTCGGAA 423980 Query 11794 GCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGT 11852 || |||||||| ||| ||||| | |||||| ||||| | ||| || | || || Sbjct 423979 CCACTGACACTGAA-GAACGGAACCTGAGACTCGCCAGCAGTAGCTTTCGCCAACAGCGT 423921 Query 11853 CTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCC 11912 |||||| || || || | |||| |||| || || || |||||||||||||| || Sbjct 423920 CTTACCAGTTCCTGGAGGTCCAGAAAGAATAGCACCTCGTGGGATCTTGGCACCGAGTCT 423861 Query 11913 AAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGA 11972 | | | || ||| |||| | ||| | |||| |||| | ||| ||||||| Sbjct 423860 TTGGAATTGTTCGGGCGTCTTCAAGAAAGCGACAAACTCCATGATTTCAGCCTTGGCTTC 423801 Query 11973 GTCGATACCCTCAACATC 11990 ||| ||||| ||||||| Sbjct 423800 GTCCATACCGGCAACATC 423783 >seq5 Length=1787800 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 1364771 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 1364712 Query 136777 GGGAACA 136783 | || || Sbjct 1364711 GTGATCA 1364705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975477283800