Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq42 297 2e-75 seq4 113 5e-20 >seq42 Length=298824 Score = 297 bits (328), Expect = 2e-75 Identities = 1195/1829 (65%), Gaps = 81/1829 (4%) Strand=Plus/Plus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 |||||||||||||| || || || || || ||||| | | |||||| | | Sbjct 241605 CGGAGATAGTACATGCCAGTTTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTGGTG 241664 Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATG-AA 105708 | |||| ||| || ||| | |||| || ||||| ||| ||||||||| || Sbjct 241665 ATCTTGCCCATTGTGGGATCCTTCATGTGAATGTTCATCGATTGTGATTGGTCAATGTAA 241724 Query 105709 GCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCCCACACTGTG 105766 || |||||| | || ||||| | | || | ||| ||| ||||||| || || Sbjct 241725 GC-ACCACGGTCAGCGGCCATTTGGACGA--TGGTTCGCTGTGAGATTTCCCAAACGGTC 241781 Query 105767 CGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCC 105826 ||| ||| |||||||||| ||||||| | | ||| || ||||| || || || | Sbjct 241782 TTGTAAAGAGCCTTGATATCAGCTGGGATGTTGGGGATGTTCTGAATCGATCCACCATC- 241840 Query 105827 TTGACCATGAGA---TCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTG 105883 | | |||| | | |||||| | | ||||| ||||| || | ||||| ||| Sbjct 241841 --GGCAATGATACGGTTCTTCATGTTGTCAGACCAGAGACCCATGTCAACAAGATCCTTG 241898 Query 105884 ACGAG--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TAGATG 105940 | | ||| |||||| | ||||| || || || | | ||| |||||| Sbjct 241899 AGCAACCATGG--GTTGACGACTTGGAACTCGCCAGCAAGAACACGACG-AGAGTAGATG 241955 Query 105941 TTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGGAGGCTGT 105999 || | ||| || || |||||||| ||||| | |||||| |||| |||| ||| || Sbjct 241956 TTGGACGTATATGGCTCAAAGCACTCATTGA-AGCCAAGAATTTGACTGGTGCTGGCAGT 242014 Query 106000 TGGCATTGGTGCCATCAA--AAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTG 106057 |||||| || || | ||| ||| || || |||||||| | || |||||| | ||| Sbjct 242015 TGGCATAGGAGCGA-CAAGCAAG-CTATTGCGAAGACCATGTTGCTTGATTTTCTGCTTC 242072 Query 106058 AGAACATCCCAGTCGTAGTTGAGCT--TGGTTTCACCTTCCCACATATCAAATTGAAGCA 106115 | ||||| || || || || ||| | || ||||||||||| | || | | Sbjct 242073 AAGCTGTCCCAATCCCAGA-GATCTGTTGGAGTAACAC-CCCACATATCATACTGCAACT 242130 Query 106116 CCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATT 106175 | || | ||| | ||||||||||||||||||||||| | || | || || Sbjct 242131 CGCCCTTGGAGGCAGGAGAACCCTCAAATGTCTCATAAGTGCCAT------CAACCTTGG 242184 Query 106176 CACAGCTCGCCTC---CAGGGA-TGCG---TGATACATGGTTTCAAAGATACGAGCATTC 106228 || ||||| || ||| || |||| || || ||||| || ||||| || || Sbjct 242185 CA-AGCTCAACTGAAGCAGTGAGTGCGGCATGGTAGATGGTCTCGAAGATTTGAATGTTG 242243 Query 106229 ATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCGA 106286 | | |||||| || || || |||| | || | | | || ||| |||| || | Sbjct 242244 AGGTGCTTGGCCTCTGGAGAGTCGAATG-GAAGACGAAGAGCCAAGAAAG-CATCAGCAA 242301 Query 106287 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC-A 106345 |||| || ||||| | | ||||||| ||| || | || | | || | || | Sbjct 242302 GACCCTGGACACCAACGGCGATAGGTCGGTGGCGGAAGTT-GCTTCTCTTGGCTTCGGGA 242360 Query 106346 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GAT 106404 || || ||| | || ||||||| ||| | || ||| ||| | ||| | || Sbjct 242361 ACAGGGTAATAGTTGACATCAATGATCTTGTTCAAGTTCTTGACAACGA-CTTGGCAGAC 242419 Query 106405 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT--GACATACTTTGGAAGG 106462 ||| |||||| | | | ||| |||||| || | ||||| |||||| | |||||| Sbjct 242420 TTCGTGAAGTCTCTGGAAGTCATAAGTGCC-GT-TGTTCATGTCGACATAGGTAGGAAGG 242477 Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || | ||| ||||| ||||| || || |||||| | | |||||| | ||| || Sbjct 242478 GCAAGTGAAGCCAAGTTGCAGACGGCAACCTCATCTGGAGCACAGTACTCAACAATCTCA 242537 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || || | ||| || || || || || | |||||| ||||| |||||| ||||||| Sbjct 242538 GTGCAGAGGTTCGAGCTTCGGATGGTACCGAGATTCTTCTGGTTGCTCTTTCTGTTGCAA 242597 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642 ||||||||||| |||||| |||| | || ||||| ||||| | || || || | | | Sbjct 242598 GCATCCTTGTAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAGCCTCCAGGATGGAGTAC 242657 Query 106643 CACA-CATCGGCGGCTGGTACAATGGCGTT--GGCCCGTCCCTCCGC-CTCGTACTTTGT 106698 || | | | ||| || | |||| || | ||| | ||| ||| ||| |||| Sbjct 242658 CAGAGCTTTTGCGCCTTG----ATGGTCTTGCGACCCTTACCTTCGCGCTCATACTGCTC 242713 Query 106699 GTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACA 106758 |||||| || || || || || || | || | | ||||| || | || || Sbjct 242714 GTAGAGAGCCTCGAATTCATCGCCATAGACATCAGCCAAGCCTGGGCACTCATTGGGGCA 242773 Query 106759 GAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 106818 | | || ||| | ||| || ||||| |||||||||||||| || ||||||||||| Sbjct 242774 CATCAAAGTCCACTCGCCATTCTTTTCAACTCGCTTCATGAAAAGATCAGGAATCCACAG 242833 Query 106819 GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 106878 || | |||||||| | | || |||| || | || || || ||| | ||||| Sbjct 242834 GGCGTAGAAGAGATCACGAGCTCGGACCTCCTCCTTGCCGTGATTCTTTCGAAGATCAAG 242893 Query 106879 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACG 106938 | |||| | || ||| |||||||||||||||||||||| |||| || || | | || Sbjct 242894 GTACTCGAAGACATCGGCGTGCCATGGCTCAAGATAGATAGCGAAAGCACC---TGGTCG 242950 Query 106939 C------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 106992 | ||| |||| | || || || || ||| ||| || || || ||||| || | Sbjct 242951 CTTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGACTCGGAGCATGGGGAC 243010 Query 106993 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG 107052 || || | || | ||||||||| || ||| | | | || | | ||| Sbjct 243011 GATGCCGTTCGAGTTACCATTTGTTCCTGCAATGTAGGCTCCGGTAGCGCGGATTCGATG 243070 Query 107053 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTT 107110 | || | ||||| || ||||| ||| || || | ||||| | | | | | || Sbjct 243071 AACGTTGAGGCCAATTCCACCAGCATTCTTGGAAATCATGGCGCA-AGT-CTTCAATGTG 243128 Query 107111 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 107170 | |||||||||| ||| ||||||||| || ||| |||||| || || | || Sbjct 243129 TCGTAGATACCGTCGATACTGTCCTCCTTCATGTCGACAAGGAAACATGAAGAGAGTTGG 243188 Query 107171 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA-CATACCTTGGGA 107229 | | ||| ||||||||| |||||| ||||| | || || |||| || | ||||| Sbjct 243189 GCTTGTGGAGTACCAGCAGCGAAGAGAGTTGGGGAAGCATGCGTGAAGCACTTC-TGGGA 243247 Query 107230 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCAC 107289 |||| | ||||||||| | ||| || || ||||| ||||| ||||||| || || Sbjct 243248 CATCAGATTGTATGTCTCAATCGCAGCCTCGATATCTTCACCGTGAATGCCGACTGCTAC 243307 Query 107290 ACGCATAAACATGTATTG-GGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-G 107347 ||||||| ||||| ||| ||| ||| || || |||||| ||| || | || || | Sbjct 243308 TCGCATAATCATGTGTTGTGGGCGTTCGCA-GATCTTGCCATTGAGGCGGAGGAGGTATG 243366 Query 107348 CTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 || ||| || || |||| |||||||| Sbjct 243367 ATC-GCTCGAGAGTCTTGAAGCCAAAGTA 243394 >seq4 Length=1888314 Score = 113 bits (124), Expect = 5e-20 Identities = 342/523 (65%), Gaps = 28/523 (5%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| ||||| ||||||||||||||||| ||||| ||| | || ||||| |||||| Sbjct 1224147 TAGTCACCAACGCGCTTCTCAAAGAAGTTAGTCTTGCCAGCGAGCGAGATGTTCTCCATA 1224206 Query 117046 AAGTCAAATGGATT------CTTCGCG---TTCCAAATGG-GTGGCACCCCAACTTGTTT 117095 ||||||||||| || ||| | ||| | || | || ||| Sbjct 1224207 AAGTCAAATGGGTTGGCAGACTTGTAGACCTTCTCATTGCCGAGGG----CAAGA----- 1224257 Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 || |||||||| | || |||| ||||| | |||| | |||||||| || | Sbjct 1224258 -AGCAGACGATCAGCGACGAACTCGATGTATTGCTTCATCAGATTCGAGTTCATGCCAAG 1224316 Query 117156 GAGATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 117215 ||| ||| || || || || | |||| ||| ||||||||| || || || | | Sbjct 1224317 GAGTGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCTTCGGTAAT 1224376 Query 117216 GATGGCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGC 117275 || | | |||| || || | | || | | ||| |||||| || Sbjct 1224377 GACGTCTTGGACAGCTTGCTTGCTTGGGCGGTGCTTCAAGTGAGAGAAGAGAAGGCAAGC 1224436 Query 117276 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGG 117335 ||| || |||||||||||| || || || || |||||||| |||||| || || | Sbjct 1224437 AAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGTTCATTGGAGAAGGTAAGACCAGC 1224496 Query 117336 CATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATAC 117394 ||| ||||| |||||||||||||| | || | ||| ||| || || ||||||||||| Sbjct 1224497 CATAAGACCACGCTTCTTCAACCAGAAGATGGACGC-GAAGGAACCACTGAAGAAGATAC 1224555 Query 117395 CCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC---AA 117451 |||| || || || || | || || | || || | ||| || |||| || Sbjct 1224556 CCTCGACGGCGGCGAATGCGACGAGACGTTGAGCAAATG---TAGAGTTCTTGTCTTGAA 1224612 Query 117452 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTAC 117494 ||| || | ||||| | |||||||||| |||||||| || Sbjct 1224613 TCCACTTGACAGCCCAGTCGGCCTTCTTCTTGATACATGGAAC 1224655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980276392040