Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq4 138 9e-27
seq1 100 2e-15
>seq4
Length=1888314
Score = 138 bits (152), Expect = 9e-27
Identities = 391/596 (66%), Gaps = 10/596 (2%)
Strand=Plus/Plus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
|| |||||||| ||| | ||||| || ||| || |||||| | | | ||| | |
Sbjct 923209 GCGATAGGTATCGATCTGGGAACTACCTATTCCTGCGTTGGTATCTTCCGCGATGATCGA 923268
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
| ||||| |||||||| || || || ||| |||| || || || | ||| | |||||
Sbjct 923269 ATCGAAATCATTGCCAACGACCAGGGAAACCGAACCACACCTTCCTTCGTTGCCTTCACC 923328
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| ||||| | | | | || ||||| || || | |||| | | || ||| ||||
Sbjct 923329 GACACTGAGCGTCTGATCGGAGATGCCGCCAAGAACCAAGTCGCCATGAACCCTCACAAT 923388
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
|| | || ||||| || ||||| || ||| | | || |||| | ||||||||
Sbjct 923389 ACAGTCTTCGATGCCAAGCGTTTGATCGGACGCAAGTTCGCTGATGCTGAGGTTCAGGCT 923448
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTA---ATGTTTCTGGAAAACCTTATATTGAA 550288
||||||||||| | || ||| | ||| | | | | ||||| || ||||||
Sbjct 923449 GATATGAAGCACTTCCCATTC---ACTGTCATCGACCGTGCCGGAAAGCCAGTCATTGAA 923505
Query 550289 GCT-ACTCATGAAGGATCTG-TTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346
| | | | | |||| | | || ||||| |||| || |||| || || ||||| |
Sbjct 923506 GTTGAGT--TCAAGGGTGAGAAGAAGCAATTCACACCTGAGGAAATCTCTTCGATGGTCT 923563
Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406
| | || ||| | || || || | ||||| | || | | || ||
Sbjct 923564 TGGTCAAGATGCGTGAGACTGCGGAGGCATACCTTGGTGGAACTGTCAACAACGCTGTCG 923623
Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466
| ||||| ||||| || || | || |||||||||||||| || || |||||||| | |
Sbjct 923624 TCACTGTCCCAGCCTACTTCACCGATTCACAACGTCAAGCCACAAAGGATGCTGGTCTGA 923683
Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526
| || || || ||||| || | || ||||| ||||| || || || || |||| ||||
Sbjct 923684 TCGCCGGTCTCAATGTCCTGAGAATCATCAACGAACCAACCGCAGCCGCCATTGCCTATG 923743
Query 550527 GACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGGT 550582
| || || || | ||| |||| ||||| |||||||| ||| ||| |||
Sbjct 923744 GTCTCGACAAGAAGGTTGAAGGTGAACGCAATGTTCTCATCTTCGATCTTGGTGGT 923799
>seq1
Length=2762476
Score = 100 bits (110), Expect = 2e-15
Identities = 116/154 (75%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 550380 TTGGTCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAA 550438
|||| ||||||| || | | || || || || || || || || || || ||| |||
Sbjct 1796444 TTGG-CAAGAAGGTTTCTAAGGCTGTTATTACCGTCCCCGCCTACTTCAACGACAACCAA 1796502
Query 550439 CGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAAT 550498
||||||||||| || ||||| || ||| ||||| || || || |||||||| |||||
Sbjct 1796503 CGTCAAGCTACCAAGGATGCCGGTGCTATCGCTGGTCTCAACGTCCTTCGTATCATCAAC 1796562
Query 550499 GAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532
|| |||||||| ||||| | |||||||| ||||
Sbjct 1796563 GAGCCTACTGCCGCTGCTATCGCATATGGTCTTG 1796596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029292245199790
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |