Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4 138 9e-27 seq1 100 2e-15 >seq4 Length=1888314 Score = 138 bits (152), Expect = 9e-27 Identities = 391/596 (66%), Gaps = 10/596 (2%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || |||||||| ||| | ||||| || ||| || |||||| | | | ||| | | Sbjct 923209 GCGATAGGTATCGATCTGGGAACTACCTATTCCTGCGTTGGTATCTTCCGCGATGATCGA 923268 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 | ||||| |||||||| || || || ||| |||| || || || | ||| | ||||| Sbjct 923269 ATCGAAATCATTGCCAACGACCAGGGAAACCGAACCACACCTTCCTTCGTTGCCTTCACC 923328 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || ||||| | | | | || ||||| || || | |||| | | || ||| |||| Sbjct 923329 GACACTGAGCGTCTGATCGGAGATGCCGCCAAGAACCAAGTCGCCATGAACCCTCACAAT 923388 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || ||||| || ||||| || ||| | | || |||| | |||||||| Sbjct 923389 ACAGTCTTCGATGCCAAGCGTTTGATCGGACGCAAGTTCGCTGATGCTGAGGTTCAGGCT 923448 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTA---ATGTTTCTGGAAAACCTTATATTGAA 550288 ||||||||||| | || ||| | ||| | | | | ||||| || |||||| Sbjct 923449 GATATGAAGCACTTCCCATTC---ACTGTCATCGACCGTGCCGGAAAGCCAGTCATTGAA 923505 Query 550289 GCT-ACTCATGAAGGATCTG-TTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 | | | | | |||| | | || ||||| |||| || |||| || || ||||| | Sbjct 923506 GTTGAGT--TCAAGGGTGAGAAGAAGCAATTCACACCTGAGGAAATCTCTTCGATGGTCT 923563 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | | || ||| | || || || | ||||| | || | | || || Sbjct 923564 TGGTCAAGATGCGTGAGACTGCGGAGGCATACCTTGGTGGAACTGTCAACAACGCTGTCG 923623 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | ||||| ||||| || || | || |||||||||||||| || || |||||||| | | Sbjct 923624 TCACTGTCCCAGCCTACTTCACCGATTCACAACGTCAAGCCACAAAGGATGCTGGTCTGA 923683 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | || || || ||||| || | || ||||| ||||| || || || || |||| |||| Sbjct 923684 TCGCCGGTCTCAATGTCCTGAGAATCATCAACGAACCAACCGCAGCCGCCATTGCCTATG 923743 Query 550527 GACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGGT 550582 | || || || | ||| |||| ||||| |||||||| ||| ||| ||| Sbjct 923744 GTCTCGACAAGAAGGTTGAAGGTGAACGCAATGTTCTCATCTTCGATCTTGGTGGT 923799 >seq1 Length=2762476 Score = 100 bits (110), Expect = 2e-15 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 550380 TTGGTCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAA 550438 |||| ||||||| || | | || || || || || || || || || || ||| ||| Sbjct 1796444 TTGG-CAAGAAGGTTTCTAAGGCTGTTATTACCGTCCCCGCCTACTTCAACGACAACCAA 1796502 Query 550439 CGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAAT 550498 ||||||||||| || ||||| || ||| ||||| || || || |||||||| ||||| Sbjct 1796503 CGTCAAGCTACCAAGGATGCCGGTGCTATCGCTGGTCTCAACGTCCTTCGTATCATCAAC 1796562 Query 550499 GAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 || |||||||| ||||| | |||||||| |||| Sbjct 1796563 GAGCCTACTGCCGCTGCTATCGCATATGGTCTTG 1796596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029292245199790