Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq4 114 1e-20 seq26 93.3 3e-14 >seq4 Length=1888314 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| ||||| || || || || ||||| || |||||||| | || | | Sbjct 715899 ACGGAGAACCAAATGGAGAGTCGACTCCTTTTGGATGTTGTAATCACTCAGTGTACGCCC 715958 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||||||||| ||||| ||||| ||||| || ||||| || || || || || Sbjct 715959 ATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTT 716018 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || || || ||| | || | ||||| || | |||||||| | || | Sbjct 716019 GTCTTGGATCTTCGACTTGACATTGTCAATGGTGTCCGAAGACTCCACTTCCAATGTAAT 716078 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| ||||| || ||||| || ||||| Sbjct 716079 GGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 716114 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || || |||||||| || || || || || || || |||| | Sbjct 716344 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 716403 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | |||| || | |||||| || || || || | ||| ||||| || || ||| Sbjct 716404 AGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGA 716463 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || ||||| || || || | || | || || || | ||| || Sbjct 716464 ATGCCTTCCTTGTCCTGAATCTTCGACTTCACGTTGTCGATGGTATCGGAAGATTCGACC 716523 Query 101423 TCAAGAGTGACCGTTTTGCCGGT 101445 |||||||||| || ||||| || Sbjct 716524 TCAAGAGTGATGGTCTTGCCAGT 716546 >seq26 Length=969302 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 101282 TTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341 ||||| || || ||||||| || || | | |||| || | |||||| || ||||| ||| Sbjct 292270 TTTTGGATGTTATAATCGGAGAGGGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATC 292211 Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401 ||||||||||| || || ||||| || || || || || || || || ||| | || Sbjct 292210 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 292151 Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | ||| || || | || || |||||||||| || ||||| || Sbjct 292150 ATAGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGT 292107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278057095347