Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq42 127 4e-24 seq4 125 1e-23 >seq42 Length=298824 Score = 127 bits (140), Expect = 4e-24 Identities = 431/661 (65%), Gaps = 19/661 (3%) Strand=Plus/Plus Query 221759 ATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGA 221818 ||||| || |||||||| || |||||| || || | || || || ||| | Sbjct 242532 ATCTCAGTGCAGAGGTTCGAGCTTCGGATGGTACCGAGATTCTTCTGGTTGCTCTTTCTG 242591 Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878 ||| ||| |||||||| ||||| |||||| ||||||||| ||||||| |||| || Sbjct 242592 TTGCAAGCATCCTTGTAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAGCCTCCAGGATG 242651 Query 221879 TTGTCCCAGAGTTCTCTGGCGC--TCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCAT 221936 || |||||| || | |||| | | ||| | | ||| ||| || ||| Sbjct 242652 GAGTACCAGAG--CTTTTGCGCCTTGATGGTCTTGCGACCCTTACCTTCGCGCT---CAT 242706 Query 221937 AC--CCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCT 221994 || | ||| ||||| | | || | || || || | || ||| |||||| ||| Sbjct 242707 ACTGCTCGTAGAGAGCCT--CGAATTCATCGCCATAGACATCAGCCAAGCCTGGGCACTC 242764 Query 221995 GGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGG 222054 ||| ||||||| | |||| | || | || || | || |||||| || || || Sbjct 242765 ATTGGGGCACATCAAAGTCCACTCGCCATTCTTTTCAACTCGCTTCATGAAAAGATCAGG 242824 Query 222055 GATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCT 222114 |||||||| || | |||||||| | | || ||||||| ||||| || || | Sbjct 242825 AATCCACAGGGCGTAGAAGAGATCACGAGCTCGGACCTCCTCCTTGCCGTGATTCTTTCG 242884 Query 222115 CAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCC 222174 ||||| | |||| || | || |||||||| ||||| ||||||| || | ||| || Sbjct 242885 AAGATCAAGGTACTCGAAGACATCGGCGTGCCATGGCTCAAGATAGATAGCGAAAGCACC 242944 Query 222175 GGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGG 222233 ||||||||||| ||||| || | || | | ||| | |||||||| || || Sbjct 242945 TGGTCGCTTGTTACCACCTTGGT-CAACGTAACGAGCAGTGTTGTTGAAGACTCGGAGCA 243003 Query 222234 TCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA 222293 | || || | ||||| || ||| || || || |||||| || ||| || | Sbjct 243004 TGGGGACGATGCCGTTCGAGTTACCATTTGTTCCTGCAATGTAGGCTCCGGTAGCGC--- 243060 Query 222294 GGTTAC--TG-GCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCT 222350 || | | || | | ||| || ||||| || | || || ||||||||||| ||| Sbjct 243061 GGATTCGATGAACGTTGAGGCCAATTCCACCAGCATTCTTGGAAATCATGGCGCAAGTCT 243120 Query 222351 TGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACG 222410 | | ||||| ||| || || ||| ||||||||| | || | || ||||| || | Sbjct 243121 TCAATGTGTCGTAGATACCGTCGATACTGTCCTCCTTCATGTCGACAAGGAAACATGAAG 243180 Query 222411 A 222411 | Sbjct 243181 A 243181 >seq4 Length=1888314 Score = 125 bits (138), Expect = 1e-23 Identities = 336/512 (66%), Gaps = 13/512 (3%) Strand=Plus/Minus Query 25816 ATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGAT-CAACAGCCAGAGCGCTACGTTTGG 25874 ||||||| |||||| ||||| | |||||||| ||| | | ||| | |||| |||| Sbjct 1224646 ATCAAGAAGAAGGCCGACTGGGCTGTCAAGTGGATTCAAGA-CAAGAACTCTACATTTGC 1224588 Query 25875 CGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGC 25934 | || || || || || || || || ||||| ||||| ||||| ||||| || ||| | Sbjct 1224587 TCAACGTCTCGTCGCATTCGCCGCCGTCGAGGGTATCTTCTTCAGTGGTTCCTTCGCGTC 1224528 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCAT 25994 |||||||||| | ||| || || ||| | || || ||| ||||| || ||||| Sbjct 1224527 CATCTTCTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACCTTCTCCAATGAACTCAT 1224468 Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCT 26054 | | |||||||||||||||| || ||||| ||||| |||| | | |||||| Sbjct 1224467 CTCTCGTGACGAGGGTCTCCACACCGACTTTGCTTGCCTTCTCTTCTC---TCACTTGAA 1224411 Query 26055 CCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGA 26113 ||| || |||| | | ||| | |||| | || ||||| ||||| ||| Sbjct 1224410 GCAC-CGCCCAAGCAAGCAAGCTGTCCAAGACGTCATTACCGAAGCTGTCGAGATTGAGC 1224352 Query 26114 AGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGA 26173 | ||||| | ||||||||| | || |||| Sbjct 1224351 AAGAGTTCTTGACTGAGGCTCTTCCTTGTGCACTCCTTGGCATGAACTCGAATCTGATGA 1224292 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGCT--GTGCCAGCTGGGACTCGCCAGACT 26231 |||||||| |||| || || || | |||||| |||| || || | | | Sbjct 1224291 AGCAATACATCGAGTTCGTCGCTGATCGTCTGCTTCTTGCC--CTCGGCAATGAGAAGGT 1224234 Query 26232 CTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCA 26290 |||| ||| ||| ||||| || ||||||||||| ||||| ||| | | || ||||| | Sbjct 1224233 CTACAAGTCTGCC-AACCCATTTGACTTTATGGAGAACATCTCGCTCGCTGGCAAGACTA 1224175 Query 26291 ACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 |||||||||| ||| | || || ||||| ||| Sbjct 1224174 ACTTCTTTGAGAAGCGCGTTGGTGACTACCAA 1224143 Score = 93.3 bits (102), Expect = 8e-14 Identities = 179/259 (69%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | || |||||||||||||||||||||||| Sbjct 1225039 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCTTTCTGGACCGCCGAAGAGATTGATCTA 1224980 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATC-CAAAGACGAGCAGCATT--TTC-TCAA 25592 | ||||| | ||| |||| || | | | ||| ||||| ||| || ||| || Sbjct 1224979 TCGAAGGATCTCCACGACTGGAAC-AACAAGCTCAATGACGACGAGCGTTACTTCATCTC 1224921 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | |||||||| || || || ||||| || || |||||||| || |||| | Sbjct 1224920 CCACGTCCTCGCATTCTTCGCTGCATCCGATGGAATTGTCAACGAGAACTTGGTCGAGCG 1224861 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | || || ||| | ||||| || |||||||| ||||| || || Sbjct 1224860 CTTCAGTGGTGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGATTCCAAATCATGAT 1224801 Query 25713 CGAAAATGTGCACTCTGAG 25731 || ||| | ||||| ||| Sbjct 1224800 GGAGAATATCCACTCCGAG 1224782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843975650240