Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq42 127 4e-24
seq4 125 1e-23
>seq42
Length=298824
Score = 127 bits (140), Expect = 4e-24
Identities = 431/661 (65%), Gaps = 19/661 (3%)
Strand=Plus/Plus
Query 221759 ATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGA 221818
||||| || |||||||| || |||||| || || | || || || ||| |
Sbjct 242532 ATCTCAGTGCAGAGGTTCGAGCTTCGGATGGTACCGAGATTCTTCTGGTTGCTCTTTCTG 242591
Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878
||| ||| |||||||| ||||| |||||| ||||||||| ||||||| |||| ||
Sbjct 242592 TTGCAAGCATCCTTGTAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAGCCTCCAGGATG 242651
Query 221879 TTGTCCCAGAGTTCTCTGGCGC--TCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCAT 221936
|| |||||| || | |||| | | ||| | | ||| ||| || |||
Sbjct 242652 GAGTACCAGAG--CTTTTGCGCCTTGATGGTCTTGCGACCCTTACCTTCGCGCT---CAT 242706
Query 221937 AC--CCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCT 221994
|| | ||| ||||| | | || | || || || | || ||| |||||| |||
Sbjct 242707 ACTGCTCGTAGAGAGCCT--CGAATTCATCGCCATAGACATCAGCCAAGCCTGGGCACTC 242764
Query 221995 GGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGG 222054
||| ||||||| | |||| | || | || || | || |||||| || || ||
Sbjct 242765 ATTGGGGCACATCAAAGTCCACTCGCCATTCTTTTCAACTCGCTTCATGAAAAGATCAGG 242824
Query 222055 GATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCT 222114
|||||||| || | |||||||| | | || ||||||| ||||| || || |
Sbjct 242825 AATCCACAGGGCGTAGAAGAGATCACGAGCTCGGACCTCCTCCTTGCCGTGATTCTTTCG 242884
Query 222115 CAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCC 222174
||||| | |||| || | || |||||||| ||||| ||||||| || | ||| ||
Sbjct 242885 AAGATCAAGGTACTCGAAGACATCGGCGTGCCATGGCTCAAGATAGATAGCGAAAGCACC 242944
Query 222175 GGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGG 222233
||||||||||| ||||| || | || | | ||| | |||||||| || ||
Sbjct 242945 TGGTCGCTTGTTACCACCTTGGT-CAACGTAACGAGCAGTGTTGTTGAAGACTCGGAGCA 243003
Query 222234 TCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA 222293
| || || | ||||| || ||| || || || |||||| || ||| || |
Sbjct 243004 TGGGGACGATGCCGTTCGAGTTACCATTTGTTCCTGCAATGTAGGCTCCGGTAGCGC--- 243060
Query 222294 GGTTAC--TG-GCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCT 222350
|| | | || | | ||| || ||||| || | || || ||||||||||| |||
Sbjct 243061 GGATTCGATGAACGTTGAGGCCAATTCCACCAGCATTCTTGGAAATCATGGCGCAAGTCT 243120
Query 222351 TGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACG 222410
| | ||||| ||| || || ||| ||||||||| | || | || ||||| || |
Sbjct 243121 TCAATGTGTCGTAGATACCGTCGATACTGTCCTCCTTCATGTCGACAAGGAAACATGAAG 243180
Query 222411 A 222411
|
Sbjct 243181 A 243181
>seq4
Length=1888314
Score = 125 bits (138), Expect = 1e-23
Identities = 336/512 (66%), Gaps = 13/512 (3%)
Strand=Plus/Minus
Query 25816 ATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGAT-CAACAGCCAGAGCGCTACGTTTGG 25874
||||||| |||||| ||||| | |||||||| ||| | | ||| | |||| ||||
Sbjct 1224646 ATCAAGAAGAAGGCCGACTGGGCTGTCAAGTGGATTCAAGA-CAAGAACTCTACATTTGC 1224588
Query 25875 CGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGC 25934
| || || || || || || || || ||||| ||||| ||||| ||||| || ||| |
Sbjct 1224587 TCAACGTCTCGTCGCATTCGCCGCCGTCGAGGGTATCTTCTTCAGTGGTTCCTTCGCGTC 1224528
Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCAT 25994
|||||||||| | ||| || || ||| | || || ||| ||||| || |||||
Sbjct 1224527 CATCTTCTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACCTTCTCCAATGAACTCAT 1224468
Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCT 26054
| | |||||||||||||||| || ||||| ||||| |||| | | ||||||
Sbjct 1224467 CTCTCGTGACGAGGGTCTCCACACCGACTTTGCTTGCCTTCTCTTCTC---TCACTTGAA 1224411
Query 26055 CCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGA 26113
||| || |||| | | ||| | |||| | || ||||| ||||| |||
Sbjct 1224410 GCAC-CGCCCAAGCAAGCAAGCTGTCCAAGACGTCATTACCGAAGCTGTCGAGATTGAGC 1224352
Query 26114 AGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGA 26173
| ||||| | ||||||||| | || ||||
Sbjct 1224351 AAGAGTTCTTGACTGAGGCTCTTCCTTGTGCACTCCTTGGCATGAACTCGAATCTGATGA 1224292
Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGCT--GTGCCAGCTGGGACTCGCCAGACT 26231
|||||||| |||| || || || | |||||| |||| || || | | |
Sbjct 1224291 AGCAATACATCGAGTTCGTCGCTGATCGTCTGCTTCTTGCC--CTCGGCAATGAGAAGGT 1224234
Query 26232 CTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCA 26290
|||| ||| ||| ||||| || ||||||||||| ||||| ||| | | || ||||| |
Sbjct 1224233 CTACAAGTCTGCC-AACCCATTTGACTTTATGGAGAACATCTCGCTCGCTGGCAAGACTA 1224175
Query 26291 ACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322
|||||||||| ||| | || || ||||| |||
Sbjct 1224174 ACTTCTTTGAGAAGCGCGTTGGTGACTACCAA 1224143
Score = 93.3 bits (102), Expect = 8e-14
Identities = 179/259 (69%), Gaps = 5/259 (2%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| |||||||||||||||| | || ||||||||||||||||||||||||
Sbjct 1225039 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCTTTCTGGACCGCCGAAGAGATTGATCTA 1224980
Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATC-CAAAGACGAGCAGCATT--TTC-TCAA 25592
| ||||| | ||| |||| || | | | ||| ||||| ||| || ||| ||
Sbjct 1224979 TCGAAGGATCTCCACGACTGGAAC-AACAAGCTCAATGACGACGAGCGTTACTTCATCTC 1224921
Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652
|||| | |||||||| || || || ||||| || || |||||||| || |||| |
Sbjct 1224920 CCACGTCCTCGCATTCTTCGCTGCATCCGATGGAATTGTCAACGAGAACTTGGTCGAGCG 1224861
Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712
|||| | || || ||| | ||||| || |||||||| ||||| || ||
Sbjct 1224860 CTTCAGTGGTGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGATTCCAAATCATGAT 1224801
Query 25713 CGAAAATGTGCACTCTGAG 25731
|| ||| | ||||| |||
Sbjct 1224800 GGAGAATATCCACTCCGAG 1224782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928843975650240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |