Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4 149 4e-30 seq26 95.1 8e-14 seq16 95.1 8e-14 >seq4 Length=1888314 Score = 149 bits (164), Expect = 4e-30 Identities = 390/593 (66%), Gaps = 4/593 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || ||||| ||| | |||||||| || || || | | | | | ||| | | Sbjct 923209 GCGATAGGTATCGATCTGGGAACTACCTATTCCTGCGTTGGTATCTTCCGCGATGATCGA 923268 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 | ||||| |||||||| ||||| || || |||| ||||| || | ||| | || || Sbjct 923269 ATCGAAATCATTGCCAACGACCAGGGAAACCGAACCACACCTTCCTTCGTTGCCTTCACC 923328 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || ||||| | ||| || |||||||| || || | |||| || || ||| ||| Sbjct 923329 GACACTGAGCGTCTGATCGGAGATGCCGCCAAGAACCAAGTCGCCATGAACCCTCACAAT 923388 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | || ||||| || | ||||| || || || || | |||| | || || || Sbjct 923389 ACAGTCTTCGATGCCAAGCGTTTGATCGGACGCAAGTTCGCTGATGCTGAGGTTCAGGCT 923448 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC- 474627 |||||| || | || || | || || | || || || ||| || |||| Sbjct 923449 GATATGAAGCACTTCCCATTCACTGTCATCGACCGTGCCGGAAAGCCAGTCATTGAAGTT 923508 Query 474628 -AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | | || | ||||| | || ||||| |||| || |||| ||||| ||||| || | Sbjct 923509 GAGTTCAAG--GGTGAGAAGAAGCAATTCACACCTGAGGAAATCTCTTCGATGGTCTTGG 923566 Query 474687 CCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTA 474746 ||| ||| | || ||| |||| ||||| | || | | || || | | Sbjct 923567 TCAAGATGCGTGAGACTGCGGAGGCATACCTTGGTGGAACTGTCAACAACGCTGTCGTCA 923626 Query 474747 CTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTG 474806 |||| ||||| || || | ||||| ||||||||||| || || ||||| || || | Sbjct 923627 CTGTCCCAGCCTACTTCACCGATTCACAACGTCAAGCCACAAAGGATGCTGGTCTGATCG 923686 Query 474807 CAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTC 474866 | ||||| ||||| | | || || || |||||||| |||||||| |||| ||||||| Sbjct 923687 CCGGTCTCAATGTCCTGAGAATCATCAACGAACCAACCGCAGCCGCCATTGCCTATGGTC 923746 Query 474867 TTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919 | || ||||| ||| ||| |||||| | ||||| ||| ||| ||| Sbjct 923747 TCGACAAGAAGGTTGAAGGTGAACGCAATGTTCTCATCTTCGATCTTGGTGGT 923799 Score = 96.9 bits (106), Expect = 2e-14 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || | ||||| || || || | ||||| || | ||||| Sbjct 716349 ACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGAGT 716408 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||| ||||||||||| || || || || ||||||||||| ||||| ||||| || Sbjct 716409 TCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCC 716468 Query 480671 TTCCTTGTCTTGAATCTT 480688 ||||||||| |||||||| Sbjct 716469 TTCCTTGTCCTGAATCTT 716486 Score = 96.9 bits (106), Expect = 2e-14 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || ||||| || ||| || || || |||||||||| || || Sbjct 716633 ACGAAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAGAAAGGGT 716692 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || ||||| ||||||||||| || || | |||||||| || || || ||||| Sbjct 716693 GCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGTGGGATTCC 716752 Query 480671 TTCCTTGTCTTGAATCTT 480688 ||||||||||||||||| Sbjct 716753 CTCCTTGTCTTGAATCTT 716770 >seq26 Length=969302 Score = 95.1 bits (104), Expect = 8e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 |||||||| | || || | | |||||||||||||||||| ||||| || | ||| ||| Sbjct 292261 TTATAATCGGAGAGGGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGT 292202 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || |||||||| |||||||| || ||||| |||||| || |||||||| Sbjct 292201 TGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTATCG 292142 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763 | | ||||| || || || || || || || ||||| ||||| Sbjct 292141 GAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 292092 >seq16 Length=1327714 Score = 95.1 bits (104), Expect = 8e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || |||||||| || || || | || ||||| | ||||| Sbjct 332085 ACGGAGACGCAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGT 332144 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || |||||||| ||||| || || || |||||||| || || |||||||| Sbjct 332145 GCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGAATTCC 332204 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||||||| || || |||||| || || ||||| | | | | || | Sbjct 332205 TTCCTTGTCTTGGATTTTGGACTTGACATTGTCGATGGTATCGGAAGACTCCA-CCTCGA 332263 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763 | || ||||| || || ||||| ||||| ||||| Sbjct 332264 GTGTGATAGTCTTGCCCGTGAGGGTCTTGACGAA 332297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268176154465508