Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq33 113 5e-20 >seq33 Length=635198 Score = 113 bits (124), Expect = 5e-20 Identities = 189/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331 |||||||| | ||||||||| || ||| ||||| | || ||| || || ||||| | Sbjct 566090 CCATGATAGACAGCATAGAATGCACTCATGTTTGCTAACAATGCCTGGGCCGTGCATACA 566031 Query 139332 TTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTAT 139391 |||||||| || || || | || || |||||||||| ||| || | || ||||| | Sbjct 566030 TTACTGGTGGCCTTCTCACGTCGGATGTGCTGCTCTCGAGTCTGCAAAGCCAATCTCATT 565971 Query 139392 GCAGGATTGCCTTCG---CTGTCCACTGACTGACCTACAATTCTGCCAGGTATCTTTCTC 139448 || ||| || | ||||| ||| ||| | || | || || ||||||||| Sbjct 565970 GCC---TTGTCTCCCAACCTGTCTTTTGATACACCAATAAGACGACCGGGGATCTTTCTC 565914 Query 139449 TTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAGGAATA 139508 || |||| || || ||||||||| |||||||| || || ||| |||| | ||| | | Sbjct 565913 TTGTACTGATCGCTTACTGCAAAGAAGGCAGCATGTGGTCCACCGAATCCAAAAGGTACA 565854 Query 139509 CCAAACCTTTGCATACTACCTACAGCAATATC 139540 ||||| | ||| | | || | |||||| || Sbjct 565853 CCAAAACGTTGAGCATTGCCAAAAGCAATGTC 565822 Score = 107 bits (118), Expect = 2e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||| ||||| || || ||||||||||||||||| ||||||||||| |||||||| Sbjct 567254 ACACCAATTGGACCCACTCCTGGACCTCCACCTCCATGAGGAATACAGAAAGTCTTATGC 567195 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 || || | || || |||||||||||| || | |||| | || | || ||| Sbjct 567194 AAGTTCAAGTGGCAGACATCTGCACCAATCTCCCCTGGTGAGCACAAGCCGATTTGGGCA 567135 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || || || || | || ||||| ||||||| | |||||| | || || | | Sbjct 567134 TTCATGTTGGCGCCGTCCATGTAAACCTGTCCACCATGTTGATGAACAAGATTGCAGA-C 567076 Query 138363 TGTC-TGATGTTTGTTTCAAATACACCA 138389 | | |||| | | ||||||||| ||| Sbjct 567075 AGCCTTGATCTCAGGTTCAAATACTCCA 567048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578997886138920