Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq37 96.9 5e-15
seq4 96.9 5e-15
>seq37
Length=479966
Score = 96.9 bits (106), Expect = 5e-15
Identities = 136/190 (72%), Gaps = 1/190 (1%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| |||| || ||||||||||| ||||| || || || || ||| |||
Sbjct 404295 ATGCAAATCTTTGTTAAGACCTTGACTGGAAAGACTATCACTTTGGAGGTTGAATCTTCG 404236
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| ||||| || || || || ||||| || || || || || || ||
Sbjct 404235 GACACTATCGACAACGTCAAGTCCAAGATTCAGGATAAGGAGGGTATCCCACCCGACCAG 404176
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||| | |||| ||| ||||||| || ||||||| | | || |||| || || ||
Sbjct 404175 CAGAGACTTATTTTTGCTAGTAAGCAACTTGAAGATAGCCGCACCCTATCCGACTACAAC 404116
Query 156003 ATATCCAAAG 156012
|| || ||||
Sbjct 404115 AT-TCAAAAG 404107
>seq4
Length=1888314
Score = 96.9 bits (106), Expect = 5e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| |||| || ||||||||||| ||||| || | || || ||| |||
Sbjct 716342 ATGCAGATCTTTGTTAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTTGAATCTTCG 716283
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || || || || || || || ||||| || ||||| || || || ||
Sbjct 716282 GACACCATCGACAATGTCAAGTCCAAGATTCAGGATAAGGAGGGCATCCCACCCGACCAG 716223
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||| | || | || |||||||| || ||||| | | ||||| |||||||| ||
Sbjct 716222 CAGAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCCGCACTTTGTCAGATTACAAC 716163
Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGT 156031
|| || ||| ||| |||| |||||||| ||
Sbjct 716162 AT-TCAAAAGGAGTCGACTCTTCATTTGGT 716134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731871350463600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |