Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 125 2e-23 seq42 118 3e-21 seq10 104 7e-17 seq2 84.2 6e-11 >seq1 Length=2762476 Score = 125 bits (138), Expect = 2e-23 Identities = 181/253 (72%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||||| ||||| | | ||||| | |||||| || || ||||||||| | || || Sbjct 1592233 CATAACATCTTCGAGAGCCTTGACAAGACGACGTTGGATGTAACCAGTTTCGGCAGTCTT 1592174 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||| ||||| |||||||| |||| ||||||||||| | || ||| Sbjct 1592173 GACAGCAGTATCAATAAGACCTTCACGACCAGCCATTGCATGGAAGAAGAATTCAGTCGG 1592114 Query 302685 TCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGA 302743 ||| | || | | | || |||||||||| ||||||| || || |||| || Sbjct 1592113 -CGTCAAACCTCGGAGGTAAGAATTCTCAACGAAGCCACGCGATTCAGGGGAATAATCAT 1592055 Query 302744 ACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803 |||||| ||||| || || || | | || | ||||| | ||||| |||||||| |||| Sbjct 1592054 CCTTGGTGAAGTGGGGAAGAGTGCGATACTTAAAGCCGAAGGGGATGCGCTTTCCCTCAA 1591995 Query 302804 CGTTCTGCTGTCC 302816 || ||| || || Sbjct 1591994 CGGACTGTTGACC 1591982 >seq42 Length=298824 Score = 118 bits (130), Expect = 3e-21 Identities = 343/521 (66%), Gaps = 13/521 (2%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || ||||||||| ||| ||||| || || |||||| || | |||||||||||| Sbjct 242522 GTACTCAACAATCTCAGTGCAGAGGTTCGAGCTTCGGATGGTACCGAGATTCTTCTGGTT 242581 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || ||||| |||||||||||||| || ||| | || | || ||||| |||| || Sbjct 242582 GCTCTTTCTGTTGCAAGCATCCTTGTAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAGC 242641 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 ||||| || |||||| | | || || || |||| | ||||| Sbjct 242642 CTCCAGGATGGAGTACCAGAGCTTTTGCGCCTTGATGGTCTTGCGACCCTTACCTTCGCG 242701 Query 155810 CTCATATT--TCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 |||||| | || || | ||| | | | || || || || |||| || || ||| Sbjct 242702 CTCATACTGCTCGTAGAGAGCCT--CGAATTCATCGCCATAGACATCAGCCAAGCCTGGG 242759 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATA 155925 |||| || |||||| | || | ||| ||| | || || |||| ||| || | Sbjct 242760 CACTCATTGGGGCACATCAAAGTCCACTCGCCATT--CTTTTCAACTCGCTTCATGAAAA 242817 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGA-CTCCTCATCGCCGTGA 155984 |||| ||| | || ||||| || || | | || || |||||| | ||||||| Sbjct 242818 GATCAGGAATCCACAGGGCGTAGAAGAGATCACGAG-CTCGGACCTCCTCCTTGCCGTGA 242876 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 ||||| || || || | | | || | ||| | || |||||| ||||| ||||| Sbjct 242877 TTCTTTCGAAGATCAAGGTACTCGAAGACATCGGCGTGCCATGGCTCAAGATAGATAGCG 242936 Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 ||| ||| | |||| ||||| || || || || |||||||| || |||||||| Sbjct 242937 AAAGCACCTGGTCGCTTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGACT 242996 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142 | ||||| || | || || || || | ||||| ||||| Sbjct 242997 CGGAGCATGGGGACGATGCCGTTCGAGTTACCATTTGTTCC 243037 >seq10 Length=1543492 Score = 104 bits (114), Expect = 7e-17 Identities = 177/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | |||||||||||| ||| | ||||| || | ||| | | | Sbjct 504107 ATCAGTCCACAGATGTCACACACATGGACTCTGAAGGCATCCGAGACCTCAAACAATCTC 504166 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| |||| || || ||||| |||||||| ||||||||||||||||| || || Sbjct 504167 TCCTTCAAGAAGGCAGCAGCTCCGTGAGAAATCATGCAATCACGCTCCATTTCTCCAAAT 504226 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT-GAGAT-TAACCATAG 251584 || | ||||||||| || || | ||| || | || |||||||| |||| | | | | Sbjct 504227 CGCAAACCACCATCTCGTGCACGACCTTCCACTGGTTGACGAGTCAAGATCTGA--AGCG 504284 Query 251585 GACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATG 251644 | || | | || ||| |||||||| ||||| || ||||| |||||| ||| Sbjct 504285 GTCCTCTAGCTCGAGCATGGATCTTATCATCGACCATGTGGCGAAGACGTTGGTAGTATG 504344 Query 251645 CGGGACCGATGAA 251657 |||||| | ||| Sbjct 504345 TGGGACCCAAGAA 504357 >seq2 Length=1957112 Score = 84.2 bits (92), Expect = 6e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075 |||||| | ||||| |||||||| || | |||||| |||||||||||||| | |||| Sbjct 929497 GCGAGACCTCCAAGAGAGTCACGATCCAAGAAATTGGTAGGTTCGTCAAGAACGAGAAGA 929556 Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 || || | ||||||| || |||| || || ||||| ||||| || || || || || Sbjct 929557 TGGGGATTGTTCCACATGGCACCAGCAAGCACAACCTTGACCTTTTGACCTCCAGAAAG 929615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816261105927