Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1 125 2e-23
seq42 118 3e-21
seq10 104 7e-17
seq2 84.2 6e-11
>seq1
Length=2762476
Score = 125 bits (138), Expect = 2e-23
Identities = 181/253 (72%), Gaps = 2/253 (1%)
Strand=Plus/Minus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
||||| ||||| | | ||||| | |||||| || || ||||||||| | || ||
Sbjct 1592233 CATAACATCTTCGAGAGCCTTGACAAGACGACGTTGGATGTAACCAGTTTCGGCAGTCTT 1592174
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684
||||| |||||||| ||||| |||||||| |||| ||||||||||| | || |||
Sbjct 1592173 GACAGCAGTATCAATAAGACCTTCACGACCAGCCATTGCATGGAAGAAGAATTCAGTCGG 1592114
Query 302685 TCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGA 302743
||| | || | | | || |||||||||| ||||||| || || |||| ||
Sbjct 1592113 -CGTCAAACCTCGGAGGTAAGAATTCTCAACGAAGCCACGCGATTCAGGGGAATAATCAT 1592055
Query 302744 ACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803
|||||| ||||| || || || | | || | ||||| | ||||| |||||||| ||||
Sbjct 1592054 CCTTGGTGAAGTGGGGAAGAGTGCGATACTTAAAGCCGAAGGGGATGCGCTTTCCCTCAA 1591995
Query 302804 CGTTCTGCTGTCC 302816
|| ||| || ||
Sbjct 1591994 CGGACTGTTGACC 1591982
>seq42
Length=298824
Score = 118 bits (130), Expect = 3e-21
Identities = 343/521 (66%), Gaps = 13/521 (2%)
Strand=Plus/Plus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| || ||||||||| ||| ||||| || || |||||| || | ||||||||||||
Sbjct 242522 GTACTCAACAATCTCAGTGCAGAGGTTCGAGCTTCGGATGGTACCGAGATTCTTCTGGTT 242581
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| ||||| |||||||||||||| || ||| | || | || ||||| |||| ||
Sbjct 242582 GCTCTTTCTGTTGCAAGCATCCTTGTAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAGC 242641
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
||||| || |||||| | | || || || |||| | |||||
Sbjct 242642 CTCCAGGATGGAGTACCAGAGCTTTTGCGCCTTGATGGTCTTGCGACCCTTACCTTCGCG 242701
Query 155810 CTCATATT--TCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867
|||||| | || || | ||| | | | || || || || |||| || || |||
Sbjct 242702 CTCATACTGCTCGTAGAGAGCCT--CGAATTCATCGCCATAGACATCAGCCAAGCCTGGG 242759
Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATA 155925
|||| || |||||| | || | ||| ||| | || || |||| ||| || |
Sbjct 242760 CACTCATTGGGGCACATCAAAGTCCACTCGCCATT--CTTTTCAACTCGCTTCATGAAAA 242817
Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGA-CTCCTCATCGCCGTGA 155984
|||| ||| | || ||||| || || | | || || |||||| | |||||||
Sbjct 242818 GATCAGGAATCCACAGGGCGTAGAAGAGATCACGAG-CTCGGACCTCCTCCTTGCCGTGA 242876
Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044
||||| || || || | | | || | ||| | || |||||| ||||| |||||
Sbjct 242877 TTCTTTCGAAGATCAAGGTACTCGAAGACATCGGCGTGCCATGGCTCAAGATAGATAGCG 242936
Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101
||| ||| | |||| ||||| || || || || |||||||| || ||||||||
Sbjct 242937 AAAGCACCTGGTCGCTTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGACT 242996
Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142
| ||||| || | || || || || | ||||| |||||
Sbjct 242997 CGGAGCATGGGGACGATGCCGTTCGAGTTACCATTTGTTCC 243037
>seq10
Length=1543492
Score = 104 bits (114), Expect = 7e-17
Identities = 177/253 (70%), Gaps = 4/253 (2%)
Strand=Plus/Plus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| || ||||| | | |||||||||||| ||| | ||||| || | ||| | | |
Sbjct 504107 ATCAGTCCACAGATGTCACACACATGGACTCTGAAGGCATCCGAGACCTCAAACAATCTC 504166
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| |||| || || ||||| |||||||| ||||||||||||||||| || ||
Sbjct 504167 TCCTTCAAGAAGGCAGCAGCTCCGTGAGAAATCATGCAATCACGCTCCATTTCTCCAAAT 504226
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT-GAGAT-TAACCATAG 251584
|| | ||||||||| || || | ||| || | || |||||||| |||| | | | |
Sbjct 504227 CGCAAACCACCATCTCGTGCACGACCTTCCACTGGTTGACGAGTCAAGATCTGA--AGCG 504284
Query 251585 GACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATG 251644
| || | | || ||| |||||||| ||||| || ||||| |||||| |||
Sbjct 504285 GTCCTCTAGCTCGAGCATGGATCTTATCATCGACCATGTGGCGAAGACGTTGGTAGTATG 504344
Query 251645 CGGGACCGATGAA 251657
|||||| | |||
Sbjct 504345 TGGGACCCAAGAA 504357
>seq2
Length=1957112
Score = 84.2 bits (92), Expect = 6e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075
|||||| | ||||| |||||||| || | |||||| |||||||||||||| | ||||
Sbjct 929497 GCGAGACCTCCAAGAGAGTCACGATCCAAGAAATTGGTAGGTTCGTCAAGAACGAGAAGA 929556
Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134
|| || | ||||||| || |||| || || ||||| ||||| || || || || ||
Sbjct 929557 TGGGGATTGTTCCACATGGCACCAGCAAGCACAACCTTGACCTTTTGACCTCCAGAAAG 929615
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471816261105927
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |