Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq7 129 7e-24 seq42 104 3e-16 seq4 102 1e-15 >seq7 Length=1615722 Score = 129 bits (142), Expect = 7e-24 Identities = 94/109 (86%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| ||||||| |||||||||||||| || || || | || |||||| | || |||||| Sbjct 1014492 GCCTCCAACTATCTCGACATCAAGCCCCTCCTTGACGTCGGATGCAAGACCGTCGCCAAC 1014433 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| |||||||||||||||||||| || ||||||| Sbjct 1014432 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACATTCAACATCA 1014384 >seq42 Length=298824 Score = 104 bits (114), Expect = 3e-16 Identities = 177/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||| ||||| || || |||| ||| ||||| ||||||||||| |||| |||||| || Sbjct 242964 TGGTCAACGTAACGAGCAGTGTTGTTGAAGACTCGGAGCATGGGGACGATGCCGTTCGAG 243023 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | || || || || || | |||||| |||| ||||| | || || | ||| Sbjct 243024 TTACCATTTGTTCCTGCAATGTAGGCTCCGGTAGCGCGGATTCGATGAACGTTGAGGCCA 243083 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || || || |||||| || | ||||| || | ||||||||||| || ||| Sbjct 243084 ATTCCACCAGCATTCTTGGAAATCATGGCGCAAGTCTTCAATGTGTCGTAGATACCGTCG 243143 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||| |||||||||| || || || || || ||| ||| | || | || || Sbjct 243144 ATACTGTCCTCCTTCATGTCGACAAGGAAACATGAAGAGAGTTGGGCTTGTGGAGTACCA 243203 Query 1630306 GCGTTGAAGAGCGTGGG 1630322 || |||||| || || Sbjct 243204 GCAGCGAAGAGAGTTGG 243220 Score = 104 bits (114), Expect = 3e-16 Identities = 113/149 (76%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104 ||||||| || || || ||||||||||| ||| | | || ||||| || || || | Sbjct 246810 AGGACAGTATTGGAGGTACGGTGACGTGTGTGATTAGGAATGTGCCTAGTGGGCTAGGAG 246869 Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164 |||| ||||| |||||||| || || ||| || ||||| |||||| || || || | Sbjct 246870 AGCCATGCTTCGACAAGATGGAAGCTCTGCTTGCTCACGCAATGCTGAGCATTCCTGCTA 246929 Query 19165 CCAAGGGATTCGAGATTGGCAGCGGGTTT 19193 | |||||||||||||||||| ||||||| Sbjct 246930 CGAAGGGATTCGAGATTGGC-TCGGGTTT 246957 >seq4 Length=1888314 Score = 102 bits (112), Expect = 1e-15 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||| || || |||||| ||| || ||||| |||||||| |||||||||| |||||| Sbjct 1224146 GTAGTCACCAACGCGCTTCTCAAAGAAGTTAGTCTTGCCAGCGAGCGAGATGTTCTCCAT 1224205 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | || ||||||| | ||||||| ||| || ||||| | ||||| || Sbjct 1224206 AAAGTCAAATGGGTTGGCAGACTTGTAGACCTTCTCATTGCCGAGGGCAAGAAGCAGACG 1224265 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 || ||||| ||||||||||| || ||| || | ||||||||| | ||| || Sbjct 1224266 ATCAGCGACGAACTCGATGTATTGCTTCATCAGATTCGAGTTCATGCCAAGGAGTGCACA 1224325 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG 868924 || || | ||| ||| ||||||| ||| |||||||| || ||| Sbjct 1224326 AGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCTTCG 1224371 Score = 91.5 bits (100), Expect = 2e-12 Identities = 142/197 (72%), Gaps = 11/197 (6%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | ||| ||| |||| || || | ||| || || ||||| Sbjct 1224452 ACCCTCGTCACGAGAGATGAGTTCATTGGAGAAGGTAAGACCAGCCATAAGACCACGCTT 1224511 Query 869239 CTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 ||| | ||| ||||||| ||| ||| || ||| ||||| |||||||||||||| | Sbjct 1224512 CTTCAACCAGAAGATGGACGC-GAAGGAACCACTGAAGAAGATACCCTCGACGGCGGCGA 1224570 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG--TTG-ATCCACTTCATCG 869354 | ||| ||| || | ||||| ||| ||| | |||| ||| |||||||| | | Sbjct 1224571 ATGCGACGAGACGTTGAGCAAA--TGTAGAG----TTCTTGTCTTGAATCCACTTGACAG 1224624 Query 869355 CCCAGTCGGCCTTTTTC 869371 ||||||||||||| ||| Sbjct 1224625 CCCAGTCGGCCTTCTTC 1224641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107133373407507