Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4 107 2e-18 seq26 91.5 1e-13 seq16 91.5 1e-13 >seq4 Length=1888314 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | ||||| || || ||||| | ||||| || | | Sbjct 716114 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATTACATTGGAAGTGGAGTCTTCG 716055 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || || ||||| || Sbjct 716054 GACACCATTGACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCACCCGACCAG 715995 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || || || |||||||| | | | || ||||| ||| Sbjct 715994 CAGCGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGGCGTACACTGAGTGATTACAAC 715935 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || |||||||| ||||| || || ||||| Sbjct 715934 ATCCAAAAGGAGTCGACTCTCCATTTGGT 715906 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| |||||||| || ||||| || ||||| |||||||| |||||||| || || || Sbjct 716770 AAGATTCAAGACAAGGAGGGAATCCCACCCGACCAACAACGCTTGATCTTCGCTGGAAAG 716711 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 ||||| ||||| | | | | || |||||||||||||| ||||| || || || || Sbjct 716710 CAGCTTGAGGACGGTCGCACCCTTTCTGATTATAACATTCAGAAGGAGTCTACCCTCCA 716652 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || | || || || ||||| || || || || ||| | | Sbjct 716342 ATGCAGATCTTTGTTAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTTGAATCTTCG 716283 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || || || || || || || ||||| || Sbjct 716282 GACACCATCGACAATGTCAAGTCCAAGATTCAGGATAAGGAGGGCATCCCACCCGACCAG 716223 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| || || || || || || || | | |||||||||| ||| Sbjct 716222 CAGAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCCGCACTTTGTCAGATTACAAC 716163 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||||||| ||||| || || ||||| Sbjct 716162 ATTCAAAAGGAGTCGACTCTTCATTTGGT 716134 >seq26 Length=969302 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || || || || || || || || || || || |||| || | || | Sbjct 292098 AAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGATACTATCGACAAT 292157 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || ||||| || || || ||||| |||||||||||| Sbjct 292158 GTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTTGATCTTT 292217 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893 ||||| || || || || ||| | | | | || ||||||||||| ||||||| Sbjct 292218 GCCGGAAAGCAACTTGAAGATGGCCGTACCCTCTCCGATTATAACATCCAAAAGG 292272 >seq16 Length=1327714 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || || || ||||| || ||||| || || | |||| || | || | Sbjct 332291 AAGACCCTCACGGGCAAGACTATCACACTCGAGGTGGAGTCTTCCGATACCATCGACAAT 332232 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || || ||||||||||| |||||||| || ||||| |||||||| ||||||| Sbjct 332231 GTCAAGTCCAAAATCCAAGACAAGGAAGGAATTCCACCCGACCAACAACGCCTGATCTTC 332172 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || || || |||||| | | | || ||||| ||||| || ||||| ||| Sbjct 332171 GCTGGCAAGCAACTCGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAGGAGTCG 332112 Query 24899 ACACTACA 24906 || || || Sbjct 332111 ACTCTTCA 332104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897200715880