Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq4 109 4e-19
seq26 100 2e-16
seq16 100 2e-16
>seq4
Length=1888314
Score = 109 bits (120), Expect = 4e-19
Identities = 147/205 (72%), Gaps = 10/205 (5%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||||| |||| ||||||||| ||||||||||| || || | || ||||
Sbjct 716359 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGAGTTCGGCCATCC 716418
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||| ||||||||||| || ||||| ||||| | || | || ||||||||
Sbjct 716419 TCAAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCCTTGTCC 716478
Query 34886 TTTATTTTTTGTTTGACG-----GATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940
| || || || ||| |||| ||||| || ||||| |||| || |
Sbjct 716479 TGAATCTTCGACTTCACGTTGTCGATGGTATCGGAAGAT-----TCGACCTCAAGAGTGA 716533
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTAC 34965
||||||| || || |||||||| ||
Sbjct 716534 TGGTCTTGCCAGTCAGGGTCTTGAC 716558
Score = 105 bits (116), Expect = 4e-18
Identities = 140/194 (72%), Gaps = 8/194 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| || || | ||| |||||||||||||||||| || || ||| |||| | ||
Sbjct 716643 AGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAGAAAGGGTGCGACCGTCC 716702
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || |||||||| |||||||||| ||||| ||||| | || | |||||||||||
Sbjct 716703 TCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGTGGGATTCCCTCCTTGTCT 716762
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| | ||||||| || || ||| || |||| || ||
Sbjct 716763 TGAATCTTGCTCTTGAC----GTTATCGATGGTATCCGAGGACTCAACCTCAAGAGTGAT 716818
Query 34942 GGTCTTTCCCGTGA 34955
||||||||| ||||
Sbjct 716819 GGTCTTTCCGGTGA 716832
>seq26
Length=969302
Score = 100 bits (110), Expect = 2e-16
Identities = 135/186 (73%), Gaps = 8/186 (4%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
|||| || |||||||| || || ||| | || |||| || |||||||||||||| ||||
Sbjct 292272 CCTTTTGGATGTTATAATCGGAGAGGGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGA 292213
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| || || ||||| | || | ||||||||||| | || || ||||| ||
Sbjct 292212 TCAAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 292156
Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| ||||| || || |||||| |||| || |||||||| ||||| ||||||||
Sbjct 292155 -TGTCGATAGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTG 292097
Query 34964 ACAAAG 34969
|| |||
Sbjct 292096 ACGAAG 292091
>seq16
Length=1327714
Score = 100 bits (110), Expect = 2e-16
Identities = 149/209 (71%), Gaps = 8/209 (4%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||| || |||| || ||||||||| ||||| || || || || |||| ||||
Sbjct 332094 CAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATC 332153
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| |||||||| || ||||||||||| ||||| ||||| | || | || ||||||||
Sbjct 332154 CTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGAATTCCTTCCTTGTC 332213
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940
| ||||| ||||| || | ||||| || | ||| || || | || |
Sbjct 332214 TTGGATTTTGGACTTGAC--AT--TGTCGATGGTATCGGAAGACTCCACCTCGAGTGTGA 332269
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969
| ||||| |||||||||||||| || |||
Sbjct 332270 TAGTCTTGCCCGTGAGGGTCTTGACGAAG 332298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325692518173949
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |