Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq4 109 4e-19 seq26 100 2e-16 seq16 100 2e-16 >seq4 Length=1888314 Score = 109 bits (120), Expect = 4e-19 Identities = 147/205 (72%), Gaps = 10/205 (5%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| |||| ||||||||| ||||||||||| || || | || |||| Sbjct 716359 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGAGTTCGGCCATCC 716418 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| ||||||||||| || ||||| ||||| | || | || |||||||| Sbjct 716419 TCAAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCCTTGTCC 716478 Query 34886 TTTATTTTTTGTTTGACG-----GATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 | || || || ||| |||| ||||| || ||||| |||| || | Sbjct 716479 TGAATCTTCGACTTCACGTTGTCGATGGTATCGGAAGAT-----TCGACCTCAAGAGTGA 716533 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTAC 34965 ||||||| || || |||||||| || Sbjct 716534 TGGTCTTGCCAGTCAGGGTCTTGAC 716558 Score = 105 bits (116), Expect = 4e-18 Identities = 140/194 (72%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| |||||||||||||||||| || || ||| |||| | || Sbjct 716643 AGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAGAAAGGGTGCGACCGTCC 716702 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| |||||||||| ||||| ||||| | || | ||||||||||| Sbjct 716703 TCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGTGGGATTCCCTCCTTGTCT 716762 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| | ||||||| || || ||| || |||| || || Sbjct 716763 TGAATCTTGCTCTTGAC----GTTATCGATGGTATCCGAGGACTCAACCTCAAGAGTGAT 716818 Query 34942 GGTCTTTCCCGTGA 34955 ||||||||| |||| Sbjct 716819 GGTCTTTCCGGTGA 716832 >seq26 Length=969302 Score = 100 bits (110), Expect = 2e-16 Identities = 135/186 (73%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || |||||||| || || ||| | || |||| || |||||||||||||| |||| Sbjct 292272 CCTTTTGGATGTTATAATCGGAGAGGGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGA 292213 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| || || ||||| | || | ||||||||||| | || || ||||| || Sbjct 292212 TCAAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 292156 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || || |||||| |||| || |||||||| ||||| |||||||| Sbjct 292155 -TGTCGATAGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTG 292097 Query 34964 ACAAAG 34969 || ||| Sbjct 292096 ACGAAG 292091 >seq16 Length=1327714 Score = 100 bits (110), Expect = 2e-16 Identities = 149/209 (71%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||| || |||| || ||||||||| ||||| || || || || |||| |||| Sbjct 332094 CAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATC 332153 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || |||||||| || ||||||||||| ||||| ||||| | || | || |||||||| Sbjct 332154 CTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGAATTCCTTCCTTGTC 332213 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | ||||| ||||| || | ||||| || | ||| || || | || | Sbjct 332214 TTGGATTTTGGACTTGAC--AT--TGTCGATGGTATCGGAAGACTCCACCTCGAGTGTGA 332269 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 | ||||| |||||||||||||| || ||| Sbjct 332270 TAGTCTTGCCCGTGAGGGTCTTGACGAAG 332298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692518173949