Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq4 120 2e-21
seq1 100 2e-15
>seq4
Length=1888314
Score = 120 bits (132), Expect = 2e-21
Identities = 213/311 (68%), Gaps = 0/311 (0%)
Strand=Plus/Minus
Query 282152 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 282211
||||||||||| || | |||| | | ||||| | || || || || || || |||
Sbjct 923936 TTTCTCTTGAACTCATTAACAAAGTGGTTAACAAGTCTGTTGTCGAAGTCCTCGCCACCC 923877
Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271
|| | ||| | || | || | | || | ||| | || || |||| | ||| ||
Sbjct 923876 AAGTGAGTGTCACCAGCAGTGGACTTGACCTCGAAGATACCCTCCTCAATGGTCAAGAGG 923817
Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG 282331
| |||||| ||||||||||| | ||| || || || ||||| ||| ||
Sbjct 923816 GAAACATCGAAAGTTCCACCACCAAGATCGAAGATGAGAACATTGCGTTCACCTTCAACC 923757
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|| || || |||||||| |||| || || || |||||||| || || ||||||| |||
Sbjct 923756 TTCTTGTCGAGACCATAGGCAATGGCGGCTGCGGTTGGTTCGTTGATGATTCTCAGGACA 923697
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| ||||| || || || ||||| || |||||||| | |||||||||| | || ||
Sbjct 923696 TTGAGACCGGCGATCAGACCAGCATCCTTTGTGGCTTGACGTTGTGAATCGGTGAAGTAG 923637
Query 282452 GCAGGAACAGT 282462
|| || |||||
Sbjct 923636 GCTGGGACAGT 923626
>seq1
Length=2762476
Score = 100 bits (110), Expect = 2e-15
Identities = 90/113 (80%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 435132 TGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAAC 435191
|||||| |||||||| | ||||||||||||||||||| ||||| |||| ||| | || ||
Sbjct 1592119 TGAATTCTTCTTCCATGCAATGGCTGGTCGTGAAGGTCTTATTGATACTGCTGTCAAGAC 1592178
Query 435192 TGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTA 435244
||| || |||||||| || ||| | ||||||||| || |||||| |||
Sbjct 1592179 TGCCGAAACTGGTTACATCCAACGTCGTCTTGTCAAGGCTCTCGAAGATGTTA 1592231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740626914200046
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |