Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq4 120 6e-22
seq16 113 9e-20
>seq4
Length=1888314
Score = 120 bits (132), Expect = 6e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| ||||| || || ||||| || || || || || || |||||| || | | ||
Sbjct 715899 ACGGAGAACCAAATGGAGAGTCGACTCCTTTTGGATGTTGTAATCACTCAGTGTACGCCC 715958
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || | ||| || ||||||||||| | || || || || || || || || |||||
Sbjct 715959 ATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTT 716018
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||||| ||||| | || ||||| ||||| || || || || |||||||| || ||
Sbjct 716019 GTCTTGGATCTTCGACTTGACATTGTCAATGGTGTCCGAAGACTCCACTTCCAATGTAAT 716078
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || ||||| ||||| ||||| || |||||
Sbjct 716079 GGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 716114
Score = 107 bits (118), Expect = 4e-18
Identities = 149/206 (72%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| || || | || || ||||| || ||||| || ||||||||||
Sbjct 716626 TACCGCCACGAAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAG 716685
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | |||||| || || || |||||||| ||||| | | |||||| || || |
Sbjct 716686 AAAGGGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGTG 716745
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCT 82760
| ||||| ||||| ||||||||| ||||| || || || || || ||||| | ||
Sbjct 716746 GGATTCCCTCCTTGTCTTGAATC-TTGCTCTTGACGTTATCGATGGTATCCGAGGACTCA 716804
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGT 82786
|| || | ||| || ||||| || ||
Sbjct 716805 ACCTCAAGAGTGATGGTCTTTCCGGT 716830
>seq16
Length=1327714
Score = 113 bits (124), Expect = 9e-20
Identities = 149/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
|||||| || | || ||||| || || ||||| || || ||||| || ||| | | ||
Sbjct 332091 ACGCAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGGCC 332150
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || ||||| || ||||| ||||| || | |||||| || || || |||||||||||
Sbjct 332151 ATCCTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGAATTCCTTCCTT 332210
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||||| || || | || ||||| || || ||||| || || || || | || ||
Sbjct 332211 GTCTTGGATTTTGGACTTGACATTGTCGATGGTATCGGAAGACTCCACCTCGAGTGTGAT 332270
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAA 82801
|||||||| || | ||||| || ||
Sbjct 332271 AGTCTTGCCCGTGAGGGTCTTGACGAA 332297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981826306844069
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |