Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4 120 6e-22 seq16 113 9e-20 >seq4 Length=1888314 Score = 120 bits (132), Expect = 6e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| || || ||||| || || || || || || |||||| || | | || Sbjct 715899 ACGGAGAACCAAATGGAGAGTCGACTCCTTTTGGATGTTGTAATCACTCAGTGTACGCCC 715958 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || | ||| || ||||||||||| | || || || || || || || || ||||| Sbjct 715959 ATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTT 716018 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| | || ||||| ||||| || || || || |||||||| || || Sbjct 716019 GTCTTGGATCTTCGACTTGACATTGTCAATGGTGTCCGAAGACTCCACTTCCAATGTAAT 716078 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| ||||| || ||||| Sbjct 716079 GGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 716114 Score = 107 bits (118), Expect = 4e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | || || ||||| || ||||| || |||||||||| Sbjct 716626 TACCGCCACGAAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAG 716685 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | |||||| || || || |||||||| ||||| | | |||||| || || | Sbjct 716686 AAAGGGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGTG 716745 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCT 82760 | ||||| ||||| ||||||||| ||||| || || || || || ||||| | || Sbjct 716746 GGATTCCCTCCTTGTCTTGAATC-TTGCTCTTGACGTTATCGATGGTATCCGAGGACTCA 716804 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || | ||| || ||||| || || Sbjct 716805 ACCTCAAGAGTGATGGTCTTTCCGGT 716830 >seq16 Length=1327714 Score = 113 bits (124), Expect = 9e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | || ||||| || || ||||| || || ||||| || ||| | | || Sbjct 332091 ACGCAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGGCC 332150 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || ||||| || ||||| ||||| || | |||||| || || || ||||||||||| Sbjct 332151 ATCCTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGAATTCCTTCCTT 332210 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| || || | || ||||| || || ||||| || || || || | || || Sbjct 332211 GTCTTGGATTTTGGACTTGACATTGTCGATGGTATCGGAAGACTCCACCTCGAGTGTGAT 332270 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAA 82801 |||||||| || | ||||| || || Sbjct 332271 AGTCTTGCCCGTGAGGGTCTTGACGAA 332297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826306844069