Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq42 145 2e-29 >seq42 Length=298824 Score = 145 bits (160), Expect = 2e-29 Identities = 466/717 (65%), Gaps = 11/717 (2%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 || ||||| ||||| ||||| || || | || | || || |||||||| ||||| Sbjct 243394 TACTTTGGCTTCAAGACTCTCGAGCGATCATACCTCCTCCGCCTCAATGGCAAGATCTGC 243335 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||||| || ||||||||| || | || || || | || ||||| || | ||||| | Sbjct 243334 GAACGCCCACAACACATGATTATGCGAGTAGCAGTCGGCATTCACGGTGAAGATATCGAG 243275 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCT--ATTCATGCTACTCCTA 110481 |||| ||||| || || | | | ||| ||| | |||||| | || | Sbjct 243274 GCTGCGATTGAGACATACAATCTGATGTCCCAGAAGT--GCTTCACGCATGCTTCCCCAA 243217 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTA 110541 | || || || || ||| || ||| | |||| || || ||| | | || | Sbjct 243216 CTCTCTTCGCTGCTGGTACTCCACAAGCCCAACTCTCTTCATGTTTCCTTGTCGACATGA 243157 Query 110542 ACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTC--TTATTTCTAA 110599 | || || ||| || ||||| || || | || |||| ||| | | ||||| || Sbjct 243156 AGGAGGACAGTATCGACGGTATCTACGACACA-TTGAAGACT-TGCGCCATGATTTCCAA 243099 Query 110600 AAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGC 110659 || |||| |||||||| | |||||||| || ||| | | ||||| | || || Sbjct 243098 GAATGCTGGTGGAATTGGCCTCAACGTTCATCGAATCCGCGCTACCGGAGCCTACATTGC 243039 Query 110660 AACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGC 110719 | | | || ||| || | || | || || ||| | ||||||||||| ||||||| Sbjct 243038 AGGAACAAATGGTAACTCGAACGGCATCGTCCCCATGCTCCGAGTCTTCAACAACACTGC 242979 Query 110720 AAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACC 110776 || || | ||||||||||| | || || | || ||||||||||| || || Sbjct 242978 TCGTTACGTTGACCAAGGTGGTAACAAGCGACCAGGTGCTTTCGCTATCTATCTTGAGCC 242919 Query 110777 TTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACA 110836 ||||| | ||| | || || | | | || ||||| || ||||| || || || Sbjct 242918 ATGGCACGCCGATGTCTTCGAGTACCTTGATCTTCGAAAGAATCACGGCAAGGAGGAGGT 242859 Query 110837 AAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCA 110896 |||| |||||| | || || || |||||||| | ||| | |||||||| || ||| | Sbjct 242858 CCGAGCTCGTGATCTCTTCTACGCCCTGTGGATTCCTGATCTTTTCATGAAGCGAGTTGA 242799 Query 110897 AGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATA 110956 | | |||||| |||| || | ||||| || || | || || | ||||||| || Sbjct 242798 AAAGAATGGCGAGTGGACTTTGATGTGCCCCAATGAGTGCCCAGGCTTGGCTGATGTCTA 242739 Query 110957 TGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAA 111013 ||| | || || || | || ||||| | ||||| ||||| ||| |||||| Sbjct 242738 TGGCGATGAATTCGAGGCTCTCTACGAGCAGTATGAGCGCGAAGGTAAGGGTCGCAA 242682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811720371231