Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4 104 6e-17 seq16 100 7e-16 seq7 84.2 5e-11 >seq4 Length=1888314 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || ||||| || |||||| |||| || ||| ||| ||| Sbjct 716339 CAGATCTTTGTTAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTTGAATCTTCGGAC 716280 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || || || ||| || Sbjct 716279 ACCATCGACAATGTCAAGTCCAAGATTCAGGATAAGGAGGGCATCCCACCCGACCAGCAG 716220 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||||||||| || ||||| | ||||| || | |||||| | ||||||||| | Sbjct 716219 AGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCCGCACTTTGTCAGATTACAACATT 716160 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || || ||||| |||||||| Sbjct 716159 CAAAAGGAGTCGACTCTTCA 716140 Score = 91.5 bits (100), Expect = 3e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || || || || |||||| | || || ||| ||| || || |||| Sbjct 716556 CAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCGACAA 716497 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| |||||||| || || ||||| ||| || ||| ||| | || ||||| Sbjct 716496 CGTGAAGTCGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAACAACGTCTCATCTT 716437 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| ||||| | || ||||| | ||| | |||| || ||| ||||||| ||||| Sbjct 716436 CGCCGGCAAGCAACTTGAGGATGGCCGAACTCTCTCCGACTATAACATCCAGAAGGAGTC 716377 Query 206364 TACTCTTCAC 206373 || |||||| Sbjct 716376 CACCCTTCAC 716367 >seq16 Length=1327714 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || || || ||||| | || ||||| ||| || || |||| Sbjct 332292 CAAGACCCTCACGGGCAAGACTATCACACTCGAGGTGGAGTCTTCCGATACCATCGACAA 332233 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| || || ||||| || ||||||||| || ||| ||| | || ||||| Sbjct 332232 TGTCAAGTCCAAAATCCAAGACAAGGAAGGAATTCCACCCGACCAACAACGCCTGATCTT 332173 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || ||||| | || ||||| | ||| | ||||||||||| ||||||| ||||| Sbjct 332172 CGCTGGCAAGCAACTCGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAGGAGTC 332113 Query 206364 TACTCTTCACCTTGT 206378 |||||||| || || Sbjct 332112 GACTCTTCATCTCGT 332098 >seq7 Length=1615722 Score = 84.2 bits (92), Expect = 5e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 101536 TTCAGCCACCTTCCGGAGGTAATTGTGCCTCTTCTCCTTTCTTAATCTCTCGAAACGAAG 101595 |||||| ||||| |||| ||||||||| | ||| || | ||| | | |||||||||| Sbjct 650976 TTCAGCAACCTTTCGGACGTAATTGTGACGCTTTTCTTCTCTAAGACGAGCGAAACGAAG 651035 Query 101596 GGCAGATTGTCCTCCCCTCCCGTGTTTCTTTGGCAAAGAGACGTCAAAATTATGAAGAAT 101655 |||||||||||| || | ||||| ||||| |||| | ||| || || |||| || Sbjct 651036 GGCAGATTGTCCACCACGGCCGTGCTTCTTGGGCAGATCGACAGAGAACTTGTGAACAAC 651095 Query 101656 TTTCTTGGTGTTCCCAGAGAGAGTCGCGAAAAGAGCAGAAGAACCGTCAAGAATAATAAA 101715 | ||| || || || || |||| || ||| | |||||| | ||| || || Sbjct 651096 ATCACGGGTATTGCCGCTTAGGGTGCCGAACAGCGCACCATTACCGTCCATAATGATGAA 651155 Query 101716 TCCGAA 101721 ||||| Sbjct 651156 GCCGAA 651161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181819724912391