Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 129 8e-24 >seq4 Length=1888314 Score = 129 bits (142), Expect = 8e-24 Identities = 212/300 (71%), Gaps = 13/300 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| || || ||||||||||| ||| | || | Sbjct 1225040 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCGTCTTTCTGGACCGCCGAAGAGATTGATC 1224982 Query 1455835 T--CGGCGC--CGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 | || | | |||| ||||| ||| | ||||||||||| | ||| Sbjct 1224981 TATCGAAGGATCTCCACG----ACTGGAACAACAAGCTCAATGACGACGAGCGTTACTTC 1224926 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| |||||||||| | || ||||| || |||||| || || ||||||| ||| Sbjct 1224925 ATCTCCCACGTCCTCG-CATTCTTCGCTGCATCCGATGGAATTGTCAACGAGAACTTGGT 1224867 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || ||||| | |||||||| | || ||||| |||| || ||||| ||||| || Sbjct 1224866 CGAGCGCTTCAGTGGTGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGATTCCAAAT 1224807 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || || |||||||| || || ||||| || || |||||||| ||| ||||||| Sbjct 1224806 CATGATGGAGAATATCCACTCCGAGACATACTCCCTTCTCATCGACACATACATCAAGGA 1224747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177804351919502