Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4 102 8e-17 seq42 98.7 1e-15 seq37 98.7 1e-15 >seq4 Length=1888314 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || |||| ||| || | || | || || || || ||||||||||||||||| || | | Sbjct 716116 CCACCTCGGAGACGAAGAACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGAC 716175 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| | ||| || || || || || || || || | | |||||| ||||| || Sbjct 716176 AA-AGTGCGGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGG 716234 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || || ||||| || ||||| ||| | ||||| || ||||| || Sbjct 716235 GATGCCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGATTCAAC 716294 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || || || || ||||| ||||| || || ||||| Sbjct 716295 CTCCAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACAAAGATCTGCAT 716342 >seq42 Length=298824 Score = 98.7 bits (108), Expect = 1e-15 Identities = 280/422 (66%), Gaps = 9/422 (2%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 ||||||||| | |||| || || || ||||||||||| ||||| || || || || | Sbjct 243325 CAACACATGATTATGCGAGTAGCAGTCGGCATTCACGGTGAAGATATCGAGGCTGCGATT 243266 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||| | ||||||| ||| || ||||| ||||| || || | || || Sbjct 243265 GAGACATACAATCTGATGTCCCAGAAGTGCTTCACGCATGCTTCCCCAACTCTCTTCGCT 243206 Query 7684 GCGGGCAC-AAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || || || || ||| ||| | || || ||||| | | |||| || ||||| Sbjct 243205 GCTGGTACTCCACAAGCC-CAACTCTCTTCATGTTTCCTTGTCGACATGAAGGAGGACAG 243147 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 |||||||| || ||| |||| || |||||||| |||||||| | | || || Sbjct 243146 TATCGACGGTATCTACGACACATTGAAGACTTGCGCCATGATTTCCAAGAATGCTGGTGG 243087 Query 7803 AATAGGTCTGAACG-TAAACGACGTGCGCGCCAACGGTAGCC-GCATCGTGTCCACCAAC 7860 ||| || || |||| | | ||| | ||||| | ||| |||| ||| | || || Sbjct 243086 AATTGGCCTCAACGTTCATCGA-ATCCGCGCTACCGG-AGCCTACATTGCAGGAACAAAT 243029 Query 7861 GGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTA 7920 || || | | ||| | | |||||| | || || ||||| ||| | | || | || Sbjct 243028 GGTAACTCGAACGGCATCGTCCCCATGCTCCGAGTCTTCAACAACACTGCTCGTTACGTT 242969 Query 7921 GACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCG 7977 ||||| || || ||||| ||| || || |||||| | ||||| |||||||| Sbjct 242968 GACCAAGGTGGTAACAAGCGACCAGGTGCTTTCGCTATCTATCTTGAGCCATGGCACGCC 242909 Query 7978 GA 7979 || Sbjct 242908 GA 242907 >seq37 Length=479966 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 134520 GATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCA 134579 || ||||||||||||||||||||| | |||| | || || || || || | ||| Sbjct 404102 GACTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGGCTATCTTCAAGTTGCTTACTAGCA 404161 Query 134580 AAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACC 134639 ||||| | | |||||| ||||| || || || || || || ||||| || ||||| Sbjct 404162 AAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGAATCTTGGACTTGACG 404221 Query 134640 GCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTA 134699 ||| | ||||| || ||||| || || | ||| || || || || || || || ||| Sbjct 404222 TTGTCGATAGTGTCCGAAGATTCAACCTCCAAAGTGATAGTCTTTCCAGTCAAGGTCTTA 404281 Query 134700 ACGAAAATTTGCAT 134713 || || |||||||| Sbjct 404282 ACAAAGATTTGCAT 404295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397951458920