Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq42 342 7e-89 >seq42 Length=298824 Score = 342 bits (378), Expect = 7e-89 Identities = 1337/2075 (64%), Gaps = 69/2075 (3%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 |||||||| || || | || || | | ||||| ||||||||||| || ||||||||| Sbjct 241572 GTAAACTGGATAGGAGCTGAAGCAGCCATGGTACGGAGATAGTACATGCCAGTTTTCAGA 241631 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || | |||| || ||| |||||||| || | ||| | ||||| || Sbjct 241632 CCCAACTTCCAGCCAGCGAAGTGCATACTGGTGATCTTGCCCATTGTGGGATCCTTCATG 241691 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 ||||| ||||||||||| ||| || ||| |||| || | || || ||||||| | Sbjct 241692 TGAATGTTCATCGATTGTGATTGGTCAATGTAAGCACCACGGTCAGCGGCCATTTGGACG 241751 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 || | || | |||||||||| ||||| ||| ||||||||| |||| | | Sbjct 241752 ATGGTTCGCTGTGAGATTTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGGATG 241811 Query 68614 CTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | | || ||||| ||||||||||||| || || ||||| || | ||| | Sbjct 241812 TTGGGGATGTTCTGAATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTGTCAGAC 241871 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730 || | | || | | | | || | || || || | ||| || || ||| Sbjct 241872 CAGAGACCCATGTCAACAAGATCCTTGAGCAACCATGGGTTGACGACTTGGAACTCGCCA 241931 Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790 | | || | ||||| ||| || || |||||||| || | | ||||| || Sbjct 241932 GCAAGAACACGACGAGAGTAGATGTTGGACGTATATGGCTCAAAGCACTCATTGAAGCCA 241991 Query 68791 AGAATTTGAGCAGTTGATG-CAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 68849 ||||||||| | | || || ||||||||||||| || || | || ||||| | |||||| Sbjct 241992 AGAATTTGA-CTGGTGCTGGCAGTTGGCATAGGAGCGACAAGCAAGCTATTGCGAAGACC 242050 Query 68850 ATGTGTTATGATTTTAT-CTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACAT 68908 |||| ||||||| | ||| || ||| ||||||||| ||||| | ||| |||| Sbjct 242051 ATGTTGCTTGATTTTCTGCTTCAAGCTGTC-CCAATCCCAGAGATCTGTTGGAGTAACAC 242109 Query 68909 TCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAG 68968 ||| | ||| || || | || || ||| || || | | |||| ||||||| Sbjct 242110 CCCACATATCATACTGCAACTCGCCCTTGGAGGCAGGAGAACCCTCAAATGTCTCATAAG 242169 Query 68969 GTCCTTCCTGTTCAGCTAGTTCACAACTT--GCCTCTAATGCACCGTAATAAATTGTTTC 69026 || || | || || ||| ||| || | ||| | | || || || || Sbjct 242170 TGCCATCAACCTTGGCAAGCTCA--ACTGAAGCAGTGAGTGCGGCATGGTAGATGGTCTC 242227 Query 69027 GAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAG-- 69083 ||| || | | ||||| | |||| || ||| || ||||||||| | | || || Sbjct 242228 GAAGATTTGAATGTTGAGGTGCTTG-GCCTCTGGAGAGTCGAATGGAAGACG-AAGAGCC 242285 Query 69084 AATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGA 69143 || ||| ||||| || | ||||| || |||| ||||||||| || | || Sbjct 242286 AAGAAA-GCATCAGCAAGACCCTGGACACCAACGGCGATAGGTCGGTGGCGGAAGTTGCT 242344 Query 69144 ACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGAC 69203 || | ||||| |||| ||| ||||| || | ||| || || || || | || ||| Sbjct 242345 TCTCTTGGCTTCGGGAACAGGGTAATAGTTGACATCAATGATCTTGTTCAAGTTCTTGAC 242404 Query 69204 TACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA-------TCGTCCATCTATAA 69256 || |||| || || | ||| | | || ||| | | || ||| | | Sbjct 242405 AACGACTTGGCAGACTTCGTGAAGTCTCTGGAAGTCATAAGTGCCGTTGTTCATGTCGA- 242463 Query 69257 CAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA- 69315 || | || || || | || || | || || || || ||||||| | | ||| Sbjct 242464 CATAGGTAGGAAGGGCAAGTGAAGCCAAGTTGCAGACGGCAACCTCATCTGGA---GCAC 242520 Query 69316 --TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGAT 69373 || | | ||||| || || || || | | ||| || || ||||| | ||| | Sbjct 242521 AGTACTCAACAATCTCAGTGCAGAGGTTCGAGCTTCGGATGGTACCGAGATTCTTCTGGT 242580 Query 69374 TACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAG 69433 | |||||| |||| || || ||||||||||| || || ||| | ||||| || |||||| Sbjct 242581 TGCTCTTTCTGTTGCAAGCATCCTTGTAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAG 242640 Query 69434 ATTCGATAATAGATTTCCAAACGACCCTA---GCATTTATTACGGTCTTGTAACGCTTCT 69490 || | || || | ||| || | | || || || ||||||| || ||| Sbjct 242641 CCTCCAGGATGGAGTACCA---GAGCTTTTGCGCCTTGAT---GGTCTTGCGACCCTTAC 242694 Query 69491 CTTTT---TCATATTGT--GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAA 69545 ||| ||||| || ||| | |||| ||||||||||| || | |||||| |||| Sbjct 242695 CTTCGCGCTCATACTGCTCGTAGAGAGCC--TCGAATTCATCGCCATAGACATCAGCCAA 242752 Query 69546 TCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCAT 69605 || || || ||||| || |||||||| | |||| | ||| | | |||||| ||||| Sbjct 242753 GCCTGGGCACTCATTGGGGCACATCAAAGTCCACTCGCCATTCTTTTCAACTCGCTTCAT 242812 Query 69606 AAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC 69665 || ||||| |||||||| || || |||||||| | | || || || || || Sbjct 242813 GAAAAGATCAGGAATCCACAGGGCGTAGAAGAGATCACGAGCTCGGACCTCCTCCTTGCC 242872 Query 69666 TGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 69725 ||| ||| |||||| || |||| | | ||| | |||||||| || ||||| || Sbjct 242873 GTGATTCTTTCGAAGATCAAGGTACTCGAAGACATCGGCGTGCCATGGCTCAAGATAGAT 242932 Query 69726 CGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATA 69785 || | | || ||||| || || || || || || | ||| | |||||||| || | Sbjct 242933 AGCGAAAGCACCTGGTCGCTTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAA 242992 Query 69786 GACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCC 69845 ||||| ||||| || | || || || || |||||||||||||| | ||| || ||| Sbjct 242993 GACTCGGAGCATGGGGACGATGCCGTTCGAGTTACCATTTGTTCCTGCAATGTAGGCTCC 243052 Query 69846 TCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGC 69905 | ||||| || | || || || ||||| || || | || || || | || Sbjct 243053 GGTAGCGCGGATTCGATGAACGTTGAGGCCAATTCCACCAGCATTCTTGGAAATCATGGC 243112 Query 69906 ACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAA 69965 ||| ||||||||||| || ||||| || || || || || |||||| | ||| || Sbjct 243113 GCAAGTCTTCAATGTGTCGTAGATACCGTCGATACTGTCCTCCTTCATGTCGACAAGGAA 243172 Query 69966 ACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGT 70025 ||| ||| | ||| ||| ||| || ||| || | || || || || || || Sbjct 243173 ACATGAAGAGAGTTGGGCTTGTGGAGTACCAGCAGCGAAGAGAGTTGGGGAAGCATGCGT 243232 Query 70026 GAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGAT 70084 ||| || || | || | |||||||||||| ||||| || | || ||||| ||| | | Sbjct 243233 GAAGCACTTCTGGGACATCAGATTGTATGTCTCAATCGCAGCCTCGATATCTTCACCG-T 243291 Query 70085 GAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTA 70144 |||| || | || || ||||| | ||| || || || ||||| | || ||| | Sbjct 243292 GAATGCCGACTGCTACTCGCATAATCATGTGTTGTGGGCGTTCGCAGATCTTGCCATTGA 243351 Query 70145 TTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA--TGAAAAGTC 70202 | ||||||||| || ||||| || || ||||| || | ||| ||||| || Sbjct 243352 GGCGGAGGAGGTATGATCGCTCGAGAGTCTTGAAGCCAAAGTATTGGTAATTGAAA--TC 243409 Query 70203 TCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAAC 70262 || ||||| | |||| | ||||| |||| ||| | ||| ||| || | Sbjct 243410 TCGGTCGTAGACAATAGCGGAATTAAGTTCTGCCTCGTGCTTGATAA-------CACACT 243462 Query 70263 AGTAGGTG-------AGATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGA 70315 ||| ||| ||| || ||||| | || ||||| |||||| || |||||| Sbjct 243463 TGTATGTGGCCTCGCTGATCATAGGAGAAAGCTTGCCATTCCGAGGATTGACGTAGTTGT 243522 Query 70316 ATAAATCTTCCATTACA-TCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATG 70374 | | ||| || ||| || || | | || || || | |||||| | || || | Sbjct 243523 AGAGGTCTGATATCACAGTCGAGAACT-GCTTCTTGGTCTGCTTGTGGAGGTTGGAGACT 243581 Query 70375 GCTATTCTGGCTGCTAGAATAGCATAGTCAGGATG 70409 || |||| || || || || |||||||| ||||| Sbjct 243582 GCAATTCGTGCAGCGAGGATGGCATAGTCGGGATG 243616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908190368440