Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 1e-13 seq42 84.2 7e-11 >seq4 Length=1888314 Score = 93.3 bits (102), Expect = 1e-13 Identities = 118/161 (73%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 443709 CGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCAT 443768 || || ||||| || || | ||||| || | || || || || ||| || ||||| Sbjct 1224583 CGTCTCGTCGCATTCGCCGCCGTCGAGGGTATCTTCTTCAGTGGTTCCTTC-GCGTCCAT 1224525 Query 443769 CTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAG 443828 |||||||||||| |||||||| |||||| ||||| ||||| || ||||| ||| Sbjct 1224524 CTTCTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACCTTCTCCAATGAACTCATCTC 1224465 Query 443829 TCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCT 443869 ||| ||||||||| | || |||||| || || ||||||| Sbjct 1224464 TCGTGACGAGGGTCTCCACACCGACTTTGCTTGCCTTCTCT 1224424 >seq42 Length=298824 Score = 84.2 bits (92), Expect = 7e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 |||||| | || ||| |||| || ||||||||| ||||| ||||| || ||||| || Sbjct 243017 CGGCATCGTCCCCATGCTCCGAGTCTTCAACAACACTGCTCGTTACGTTGACCAAGGTGG 242958 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA 255081 ||| || ||||| || ||| | ||||| || ||||| ||||||||||| Sbjct 242957 TAACAAGCGACCAGGTGCTTTCGCTATCTATCTTGAGCCATGGCACGCCGA 242907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588334555110595