Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq42 268 1e-66 seq4 114 2e-20 >seq42 Length=298824 Score = 268 bits (296), Expect = 1e-66 Identities = 1180/1822 (65%), Gaps = 67/1822 (4%) Strand=Plus/Plus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 |||||||||||||| || || || || || ||||| | | |||||| | | Sbjct 241605 CGGAGATAGTACATGCCAGTTTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTGGTG 241664 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATG-AA 110481 | |||| ||| || ||| | |||| | |||||| ||| |||||||||| || Sbjct 241665 ATCTTGCCCATTGTGGGATCCTTCATGTGAATGTTCATCGATTGTGATTGGTCAATGTAA 241724 Query 110482 GCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCA-TCTTA-ATTTCCCAAACTGTG 110539 || || | || || ||||| | | || | ||| | | | ||||||||||| || Sbjct 241725 GCACCACGGTCA-GCGGCCATTTGGACGA--TGGTTCGCTGTGAGATTTCCCAAACGGTC 241781 Query 110540 CGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCC 110599 || ||| |||||||||| ||||||| | | ||| ||||| || || || || | Sbjct 241782 TTGTAAAGAGCCTTGATATCAGCTGGGATGTTGGGGATGTTCTGAATCGATCCACCATCG 241841 Query 110600 TTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACG 110659 | || | | |||||| | | ||||||||||| || | || || |||| Sbjct 241842 GCAATGATACGGTTCTTCATGTTGTCAGACCAGAGACCCATGTCAACAAGATCCTTGAGC 241901 Query 110660 AGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTT 110719 | |||||| | ||||| || || || | | ||||||||| | Sbjct 241902 AACCATGGGTTGACGACTTGGAACTCGCCAGCAAGAACACGACGAGAGTAGATGTTGGAC 241961 Query 110720 GTGTATGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGGAGGCTGTTGGCAT 110778 || ||||| |||||||| ||||| | |||||| |||| |||| ||| |||||||| Sbjct 241962 GTATATGGCTCAAAGCACTCATTGA-AGCCAAGAATTTGACTGGTGCTGGCAGTTGGCAT 242020 Query 110779 TGGTGCCATCAA--AAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACA 110836 || || | ||| ||| || || |||||||| | | |||||| | ||| | Sbjct 242021 AGGAGCGA-CAAGCAAG-CTATTGCGAAGACCATGTTGCTTGATTTTCTGCTTCAAGCTG 242078 Query 110837 TCCCAGTCGTAGTTGAGCT--TGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTT 110894 ||||| || || || || ||| | || ||||||| ||| |||| | | | || | Sbjct 242079 TCCCAATCCCAGA-GATCTGTTGGAGTAACAC-CCCACATATCATACTGCAACTCGCCCT 242136 Query 110895 GGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 110954 ||| || |||||||||||||| || ||||| | || | || || || ||| Sbjct 242137 TGGAGGCAGGAGAACCCTCAAATGTCTCATAAGTGCCAT------CAACCTTGGCA-AGC 242189 Query 110955 TCGCCTC---CAGGGA-TGCG---TGATACATGGTTTCAAAGATACGAGCATTCATCTCC 111007 || || ||| || |||| || || ||||| || ||||| || || | | | Sbjct 242190 TCAACTGAAGCAGTGAGTGCGGCATGGTAGATGGTCTCGAAGATTTGAATGTTGAGGTGC 242249 Query 111008 TTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCGAGACCTT 111065 ||||| || || || |||| | || | | | || ||| |||| || ||||| | Sbjct 242250 TTGGCCTCTGGAGAGTCGAATG-GAAGACGAAGAGCCAAGAAAG-CATCAGCAAGACCCT 242307 Query 111066 GAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC-AACGGGA 111124 | ||||| | | ||||||| ||| || | || | | || | || ||| || Sbjct 242308 GGACACCAACGGCGATAGGTCGGTGGCGGAAGTT-GCTTCTCTTGGCTTCGGGAACAGGG 242366 Query 111125 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GATTTCATG 111183 ||| | || ||||||| ||| | || ||| ||| | ||| | || ||| || Sbjct 242367 TAATAGTTGACATCAATGATCTTGTTCAAGTTCTTGACAACGA-CTTGGCAGACTTCGTG 242425 Query 111184 AAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT--GACATACTTTGGAAGGGCGATT 111241 |||| | | | ||| |||||| || | ||||| |||||| | |||||||| | | Sbjct 242426 AAGTCTCTGGAAGTCATAAGTGCC-GT-TGTTCATGTCGACATAGGTAGGAAGGGCAAGT 242483 Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 || ||||| ||||| || || |||||| | | |||||| | ||| || || || Sbjct 242484 GAAGCCAAGTTGCAGACGGCAACCTCATCTGGAGCACAGTACTCAACAATCTCAGTGCAG 242543 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 | ||| || || || || || | |||||| ||||| ||||| ||||||| |||||| Sbjct 242544 AGGTTCGAGCTTCGGATGGTACCGAGATTCTTCTGGTTGCTCTTTCTGTTGCAAGCATCC 242603 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-C 111420 ||||| |||||| |||| | || ||||| ||||| | | || || | | ||| | | Sbjct 242604 TTGTAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAGCCTCCAGGATGGAGTACCAGAGC 242663 Query 111421 ATCGGCGGCTGGTACAATGGCGTTGG--CCCGTCCCTCCGC-CTCGTACTTTGTGTAGAG 111477 | ||| || | |||| ||| ||| | ||| ||| ||| |||| |||||| Sbjct 242664 TTTTGCGCCTTG----ATGGTCTTGCGACCCTTACCTTCGCGCTCATACTGCTCGTAGAG 242719 Query 111478 GGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAG 111537 || || || || || || | || | | ||||| || | || || | | Sbjct 242720 AGCCTCGAATTCATCGCCATAGACATCAGCCAAGCCTGGGCACTCATTGGGGCACATCAA 242779 Query 111538 AGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGA 111597 || ||| | ||| | ||||| |||||||||||||| || ||||||||||||| | Sbjct 242780 AGTCCACTCGCCATTCTTTTCAACTCGCTTCATGAAAAGATCAGGAATCCACAGGGCGTA 242839 Query 111598 AAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTC 111657 |||||||| | | || |||| || | || || || ||| | |||||| |||| Sbjct 242840 GAAGAGATCACGAGCTCGGACCTCCTCCTTGCCGTGATTCTTTCGAAGATCAAGGTACTC 242899 Query 111658 CATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC----- 111712 | || ||| |||||||||||||||||||||| |||| || || | | ||| Sbjct 242900 GAAGACATCGGCGTGCCATGGCTCAAGATAGATAGCGAAAGCACC---TGGTCGCTTGTT 242956 Query 111713 -CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACC 111771 ||| |||| | || || || || ||| ||| || || || ||||| || | || || Sbjct 242957 ACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGACTCGGAGCATGGGGACGATGCC 243016 Query 111772 ATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTG 111831 | || | ||||||||| || ||| | | | || | | ||| | || Sbjct 243017 GTTCGAGTTACCATTTGTTCCTGCAATGTAGGCTCCGGTAGCGCGGATTCGATGAACGTT 243076 Query 111832 CATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCATAG 111889 | ||||| || ||||| ||| || || | ||||| | | | | | || | ||| Sbjct 243077 GAGGCCAATTCCACCAGCATTCTTGGAAATCATGGCGCA-AGT-CTTCAATGTGTCGTAG 243134 Query 111890 ATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTT 111949 ||||||| ||| ||||||||| || ||| |||||| || || | || | | | Sbjct 243135 ATACCGTCGATACTGTCCTCCTTCATGTCGACAAGGAAACATGAAGAGAGTTGGGCTTGT 243194 Query 111950 GGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA-CATACCTTGGGACATCTT 112008 || ||||||||| |||||| ||||| | || || |||| || | ||||||||| Sbjct 243195 GGAGTACCAGCAGCGAAGAGAGTTGGGGAAGCATGCGTGAAGCACTTC-TGGGACATCAG 243253 Query 112009 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCAT 112068 | ||||||||| | ||| || || ||||| ||||| ||||||| ||| || ||||| Sbjct 243254 ATTGTATGTCTCAATCGCAGCCTCGATATCTTCACCGTGAATGCCGACTGCTACTCGCAT 243313 Query 112069 GAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCT 112127 | ||||| |||||| ||| || |||||| ||| || | || || | || || Sbjct 243314 AATCATGTGTTGTGGGCGTTCGCAGATCTTGCCATTGAGGCGGAGGAGGTATGATC-GCT 243372 Query 112128 CAAGGGTTTTGAGACCAAAGTA 112149 | || || |||| |||||||| Sbjct 243373 CGAGAGTCTTGAAGCCAAAGTA 243394 >seq4 Length=1888314 Score = 114 bits (126), Expect = 2e-20 Identities = 342/521 (66%), Gaps = 24/521 (5%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| || || ||||||||||||||||| ||||| ||| | || ||||| |||||| Sbjct 1224147 TAGTCACCAACGCGCTTCTCAAAGAAGTTAGTCTTGCCAGCGAGCGAGATGTTCTCCATA 1224206 Query 122431 AAGTCAAATGGATT------CTTCGCG---TTCCAAATGG-GTGGCACCCCAACTTGTTT 122480 ||||||||||| || ||| | ||| | || | || ||| Sbjct 1224207 AAGTCAAATGGGTTGGCAGACTTGTAGACCTTCTCATTGCCGAGGG----CAAGA----- 1224257 Query 122481 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 122540 || |||||||| | || |||| ||||| | |||| | |||||||| || | Sbjct 1224258 -AGCAGACGATCAGCGACGAACTCGATGTATTGCTTCATCAGATTCGAGTTCATGCCAAG 1224316 Query 122541 GAGGTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 122600 ||| ||| || || || || | |||| ||| ||||||||| || || || | | Sbjct 1224317 GAGTGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCTTCGGTAAT 1224376 Query 122601 GATGGCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGC 122660 || | | |||| || || | | || | | ||| |||||| || Sbjct 1224377 GACGTCTTGGACAGCTTGCTTGCTTGGGCGGTGCTTCAAGTGAGAGAAGAGAAGGCAAGC 1224436 Query 122661 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGG 122720 ||| || |||||||||||| || || || || |||||||| |||||| ||||| | Sbjct 1224437 AAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGTTCATTGGAGAAGGTAAGACCAGC 1224496 Query 122721 CATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATAC 122779 ||| ||||| |||||||||||||| | || | ||| ||| || || ||||||||||| Sbjct 1224497 CATAAGACCACGCTTCTTCAACCAGAAGATGGACGC-GAAGGAACCACTGAAGAAGATAC 1224555 Query 122780 CCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA-GGAGCGAGACTTTGCATCAAAC 122838 |||| || || || || | || |||| || || | || | ||| | | || | Sbjct 1224556 CCTCGACGGCGGCGAATGCGACGAGACGTTGAGCAAATGTAGAG-TTCTTGTCTTGAATC 1224614 Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTAC 122879 || || | ||||| | |||||||||| |||||||| || Sbjct 1224615 CACTTGACAGCCCAGTCGGCCTTCTTCTTGATACATGGAAC 1224655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031442621600