Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq42 179 5e-40 seq4 158 1e-33 seq7 89.7 6e-13 >seq42 Length=298824 Score = 179 bits (198), Expect = 5e-40 Identities = 1131/1768 (64%), Gaps = 82/1768 (5%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 ||||| |||||||| || || || || ||| ||||||| || | ||||| || Sbjct 241605 CGGAGATAGTACATGCCAGTTTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTGGTG 241664 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATG-AA 117955 | |||| | || ||| | |||| | |||||| ||| ||||| || ||| || Sbjct 241665 ATCTTGCCCATTGTGGGATCCTTCATGTGAATGTTCATCGATTGTGATTGGTCAATGTAA 241724 Query 117956 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTC 118013 || || || || || ||||| | | | | ||| ||| ||||||| || ||| Sbjct 241725 GCA-CCACGGTCAGCGGCCATTTGGACGA--TGGTTCGCTGTGAGATTTCCCAAACGGTC 241781 Query 118014 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC 118073 |||| || ||| |||||| ||||||| | ||| || || || |||||||| | Sbjct 241782 TTGTAAAGAGCCTTGATATCAGCTGGGATGTTGGGGATGTTCTGAATCGATCCACCATC- 241840 Query 118074 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCC 118130 | | |||| | | |||||| | | ||||||||||| || | ||||||| Sbjct 241841 --GGCAATGATACGGTTCTTCATGTTGTCAGACCAGAGACCCATGTCAACAAGATCCTTG 241898 Query 118131 ACGAG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATA 118187 | | ||| | |||| || ||||| || || || || | ||| ||||| Sbjct 241899 AGCAACCATGGGT--TGACGACTTGGAACTCGCCAGCAAGAACACGACG-AGAGTAGATG 241955 Query 118188 TTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGGAGGCTGT 118246 |||| ||| ||||||||||||||||||||| | |||||| || | || ||| ||| || Sbjct 241956 TTGGACGTATATGGCTCAAAGCACTCATTG-AAGCCAAGAATTTGACTGGTGCTGGCAGT 242014 Query 118247 GGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAG 118306 ||||| || || | || | ||| || || ||||| | || | | || | ||| | Sbjct 242015 TGGCATAGGAGCGACAAGCAAGCTATTGCGAAGACCATGTTGCTTGATTTTCTGCTTCA- 242073 Query 118307 AGC-GTCCCAGTCGTAGTTGAGCTTT----GTCTCCCCCTGCCACATATCAAACTGGAGG 118361 ||| |||||| || || || || | || | || |||||||||| |||| | Sbjct 242074 AGCTGTCCCAATCCCAG-AGATCTGTTGGAGTAACACC---CCACATATCATACTGCAAC 242129 Query 118362 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 118421 || | ||| || || || ||||||||||||||||| | ||| ||||||| || | Sbjct 242130 TCGCCCTTGGAGGCAGGAGAACCCTCAAATGTCTCATAAGTGCCATCAACCTTGGCAAGC 242189 Query 118422 TCGGAGCT--CGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTG 118479 || | || || ||| || || || || || || || || || || || | Sbjct 242190 TC--AACTGAAGCAGTGAGTGCGGCATGGTAGATGGTCTCGAAGATTTGAATGTTGAGGT 242247 Query 118480 CCTTGGCCTCGTCGGAATCAAACGCGAGTCG-GCACAAAATAAATACATCCGCGAGACCT 118538 ||||||||| || || || | || || | || ||| |||| || ||||| Sbjct 242248 GCTTGGCCTCTGGAGAGTCGAATGGAAGACGAAGAGCCAAGAAA-GCATCAGCAAGACCC 242306 Query 118539 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTC-CGAGCGGTC-TCCACGG 118596 |||||||| | | | || || || || | | || |||| | | || || | Sbjct 242307 TGGACACCAACGGCGATAGGTCGGTGGCGGAAGTT--GCTTCTCTTGGCTTCGGGAACAG 242364 Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC--CTTTG-TGATTT 118653 | ||| | || ||| || | | | || | || | ||||||| ||| | || || Sbjct 242365 GGTAATAGTTGACATCAATGATCTTGTTCAAGTTCT---TGACAACGACTTGGCAGACTT 242421 Query 118654 CATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA--TTGACATACTTAGGAAGGGC 118711 | ||||| | | | | ||| || ||| || | |||| | |||||| |||||||||| Sbjct 242422 CGTGAAGTCTCTGGAAGTCATAAGTGC-CGT-TGTTCATGTCGACATAGGTAGGAAGGGC 242479 Query 118712 GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGT 118771 | ||| |||| || || || | |||||| | || |||||| | ||| || || Sbjct 242480 AAGTGAAGCCAAGTTGCAGACGGCAACCTCATCTGGAGCACAGTACTCAACAATCTCAGT 242539 Query 118772 GCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 118831 ||| | ||| || || ||||| || | ||||| || || |||| |||| || || Sbjct 242540 GCAGAGGTTCGAGCTTCGGATGGTACCGAGATTCTTCTGGTTGCTCTTTCTGTTGCAAGC 242599 Query 118832 ATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 118891 |||||||||||||||| | || | || ||||| || || | || || || | | ||| Sbjct 242600 ATCCTTGTAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAGCCTCCAGGATGGAGTACCA 242659 Query 118892 GA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCT---CTTC---CTCGTACTTTG 118944 || | | || || | ||| ||| || |||| |||| ||| |||| Sbjct 242660 GAGCTTTTGCGCCTTG----ATGGTCTTG---CGACCCTTACCTTCGCGCTCATACTGCT 242712 Query 118945 TGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGC 119004 |||||| || || || || || || | | || | | ||||| || || |||| Sbjct 242713 CGTAGAGAGCCTCGAATTCATCGCCATAGACATCAGCCAAGCCTGGGCACTCATTGGGGC 242772 Query 119005 AGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGA 119064 | | | || ||| | ||| || ||||| ||||||||||| || || || ||||| | Sbjct 242773 ACATCAAAGTCCACTCGCCATTCTTTTCAACTCGCTTCATGAAAAGATCAGGAATCCACA 242832 Query 119065 GCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCA 119124 | || |||||||||| ||| || | || || | || ||||| || | || | Sbjct 242833 GGGCGTAGAAGAGATCACGAGCTCGGACCTCCTCCTTGCCGTGATTCTTTCGAAGATCAA 242892 Query 119125 AAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGAC 119184 | || | || ||| |||||||| || || || || | |||| | | ||| | | Sbjct 242893 GGTACTCGAAGACATCGGCGTGCCATGGCTCAAGATAGATAGCGAAAG-CACCT--GGTC 242949 Query 119185 G------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAA 119238 | |||| | |||| || || | |||||| ||| || || || ||||| || | Sbjct 242950 GCTTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGACTCGGAGCATGGGGA 243009 Query 119239 TGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACT-TATTGGCTCTGACATCG 119297 ||| || | || | |||||||| || ||| || || | || | || ||| Sbjct 243010 CGATGCCGTTCGAGTTACCATTTGTTCCTGCAAT-GTAGGCTCCGGTAGCGCGGA-TTCG 243067 Query 119298 -TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACT 119356 || | || | ||||| || || || ||| || || ||||| | | | | Sbjct 243068 ATGAACGTTGAGGCCAATTCCACCAGCATTCTTGGAAATCATGGCGCAAGTCTTCAATGT 243127 Query 119357 GCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTG 119416 | ||||||| || ||||| ||| |||| | ||| ||||| || || | ||| Sbjct 243128 GTCGTAGATACCGTCGATACTGTCCTCCTTCATGTCGACAAGGAAACATGAAGAGAGTTG 243187 Query 119417 AGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA-CATACCTTGG 119474 ||| || || |||||||| |||||||||||| | || || |||| || | ||| Sbjct 243188 -GGCTTGTGGAGTACCAGCAGCGAAGAGAGTTGGGGAAGCATGCGTGAAGCACTTC-TGG 243245 Query 119475 GACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAG 119534 |||||| | ||| ||||| | | || || ||||| |||||||| |||| | Sbjct 243246 GACATCAGATTGTATGTCTCAATCGCAGCCTCGATATCTTCACCGTGAATGCCGACTGCT 243305 Query 119535 ACCCGCATAAACATGTATTG-GGGTGTT 119561 || ||||||| ||||| ||| ||| ||| Sbjct 243306 ACTCGCATAATCATGTGTTGTGGGCGTT 243333 >seq4 Length=1888314 Score = 158 bits (174), Expect = 1e-33 Identities = 346/512 (68%), Gaps = 6/512 (1%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| ||||| |||||||| |||||||| ||||| || | | ||| ||||||||| Sbjct 1224147 TAGTCACCAACGCGCTTCTCAAAGAAGTTAGTCTTGCCAGCGAGCGAGATGTTCTCCATA 1224206 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGG-AGAC 129845 || ||||||||||| || || | | | || || | | | || | |||| Sbjct 1224207 AAGTCAAATGGGTTGGCAGACTTGTAGACCTTCT--CATTGCCGAGGGCAAGAAGCAGAC 1224264 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 |||| | |||| |||| ||||| | |||| | |||||||| || | ||| || Sbjct 1224265 GATCAGCGACGAACTCGATGTATTGCTTCATCAGATTCGAGTTCATGCCAAGGAGTGCAC 1224324 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | || || || || | |||| | | |||||| || |||||||| | || | | | Sbjct 1224325 AAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCTTCGGTAATGACGTCTT 1224384 Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCAAACTCC 130024 | | | | | ||| || | | || |||| |||||| ||||| || Sbjct 1224385 GGACAGCTTGCTTGCTTGGGCGGT-GCTTCAAGTGAGAGAAGAGAAGGCAAGCAAAGTCG 1224443 Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084 |||||||||||||||||| |||||||||||||| |||||| ||||| | ||| ||| Sbjct 1224444 GTGTGGAGACCCTCGTCACGAGAGATGAGTTCATTGGAGAAGGTAAGACCAGCCATAAGA 1224503 Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 || ||||||||||||||||| || | || || ||| ||||||||| ||||| || Sbjct 1224504 CCACGCTTCTTCAACCAGAAGATGGACGCGAAGGAACCACTGAAGAAGATACCCTCGACG 1224563 Query 130145 CACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATC 130204 ||||| || | |||||| | |||||| | | ||| | || |||||| | Sbjct 1224564 GCGGCGAATGCGACGAGACGTTGAGCAAATGTAGAGTTCTTGTCTTGAATCCACTTGACA 1224623 Query 130205 GCCCACTGCGCCTTTTTCTCGATACACGGGAC 130236 ||||| | ||||| |||| |||||| || || Sbjct 1224624 GCCCAGTCGGCCTTCTTCTTGATACATGGAAC 1224655 >seq7 Length=1615722 Score = 89.7 bits (98), Expect = 6e-13 Identities = 216/322 (67%), Gaps = 10/322 (3%) Strand=Plus/Minus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA--G 14210 || ||||||||||||||||||| |||||||| || ||| | || || || || | Sbjct 424186 AATCCATCCATCTCAGTCAAGATTTGATTGAGTGTAGCTTCTCTCTCGTCGTTACCACCG 424127 Query 14211 GCATACCACCCGCACTG----CGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266 | | | ||| || || || || | ||||| |||||||||||||| | | Sbjct 424126 CCGAATGAGCCGGCCTTTCCACGGGCTTTGCCAATAGCGTCGATTTCATCGATGAAGATG 424067 Query 14267 ATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326 |||||||| ||| | | || | ||| | ||||||||||| ||||| ||| Sbjct 424066 ATACATGGAGTATTCTTTCTCGCCATAGAAAAAAGATCTCGCACTCGTGAAGCACCAACA 424007 Query 14327 CCCACAAACATCTCCACAAAATTGG--CGGCGGAACATTGGATGAAGGGGACGTTAGATT 14384 || |||||||| ||||| || | || | | | ||| | || ||| || || | ||| | Sbjct 424006 CCAACAAACATTTCCACGAACTCGGAACCACTG-ACACT-GAAGAACGGAACCTGAGACT 423949 Query 14385 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGG 14444 | || || | ||| || | || ||||| || || ||||| || | |||| | Sbjct 423948 CGCCAGCAGTAGCTTTCGCCAACAGCGTCTTACCAGTTCCTGGAGGTCCAGAAAGAATAG 423889 Query 14445 CACCACGTGGGATCCTGGCACC 14466 |||| ||||||||| ||||||| Sbjct 423888 CACCTCGTGGGATCTTGGCACC 423867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434651138760