Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq42 275 7e-69 seq4 141 1e-28 >seq42 Length=298824 Score = 275 bits (304), Expect = 7e-69 Identities = 1140/1754 (65%), Gaps = 61/1754 (3%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 |||||| ||||| | ||||| || || |||| ||||| || ||||| || || ||| Sbjct 243329 CCCACAACACATGATTATGCGAGTAGCAGTCGGCATTCACGGTGAAGATATCGAGGCTGC 243270 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATG-TTCATTCACGCAACACCAACCCTCT 104339 | ||||||||| | ||||||||| | || |||| || || | ||||| |||| Sbjct 243269 GATTGAGACATACAATCTGATGTCCCA-GAAGTGCTTCACGCATGCTTCCCCAACTCTCT 243211 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 || ||||||||| ||| | ||||| | || || |||||| ||| || ||||||| Sbjct 243210 TCGCTGCTGGTACTCCACAAGCCCAACTCTCTTCATGTTTCCTTGTCGACATGAAGGAGG 243151 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGC 104457 || ||| |||||||||| | || | | | | | ||||| | || || ||| || Sbjct 243150 ACAGTATCGACGGTATCTACGACACATTGAAG-ACT-TGCGCCATGATTTCCAAGAATGC 243093 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGAC 104517 ||| || ||||| | || | ||| | | || | | | ||| || || Sbjct 243092 TGGTGGAATTGGCCTCAACGTTCATCGAATCCGCGCTACCGGAGCCTACATTGCAGGAAC 243033 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 ||||||| | || | || || | || ||||| || || || ||| ||| || || || Sbjct 243032 AAATGGTAACTCGAACGGCATCGTCCCCATGCTCCGAGTCTTCAACAACACTGCTCGTTA 242973 Query 104578 TGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631 || | |||| ||| ||| | | || || |||| |||||||||||||||| Sbjct 242972 CGTTGACCAAGGTGGTAACAAGCGACCA---GGTGCTTTCGCTATCTATCTTGAGCCATG 242916 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 |||||| ||| || | |||| |||||| | || || || || | ||||||| || Sbjct 242915 GCACGCCGATGTCTTCGAGTACCTTGATCTTCGAAAGAATCACGGCAAGGAGGAGGTCCG 242856 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 || |||||||||| ||| || |||||||| ||||| ||||||||| ||||||| | Sbjct 242855 AGCTCGTGATCTCTTCTACGCCCTGTGGATTCCTGATCTTTTCATGAAGCGAGTTGAAAA 242796 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 || |||| | ||| || | | || || | || || || | | |||| | || Sbjct 242795 GAATGGCGAGTGGACTTTGATGTGCCCCAATGAGTGCCCAGGCTTGGCTGATGTCTATGG 242736 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACG 104869 || || || || || || ||| |||| ||| |||||| || | | || ||| Sbjct 242735 CGATGAATTCGAGGCTCTCTACGAGCAGTATGAGCGCGAAGGTAAGG-GTC-GCAAGACC 242678 Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 | | || || | | | ||| | | || || || |||| ||||||||||| | || Sbjct 242677 AT-CAAGGCGCAAAAGCTCTGGTACTCCATCCTGGAGGCTCAGACCGAGACTGGCAATCC 242619 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 | |||||||||||| || || || ||| |||||| || || |||||| | ||| || Sbjct 242618 CTTCATGCTTTACAAGGATGCTTGCAACAGAAAGAGCAACCAGAAGAATCTCGGTACCAT 242559 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 | || || || ||||| || || || | || | | ||||||| || || Sbjct 242558 CCGAAGCTCGAACCTCTGCACTGAGATTGTTGAGTACTGTGCTCCAGATGAGGTTGCCGT 242499 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACATTT 105106 || ||| | || ||| | || || || | ||||| || || |||| | || | | Sbjct 242498 CTGCAACTTGGCTTCACTTGCCCTTCCTACCTATGTCGA--CATGAACAACGGCACTTAT 242441 Query 105107 GATTATGAAAAACTCCACGAAGT-TACGAAAACTGTCACCAAAAACCTAAACAGAGTTAT 105165 || | | | ||| |||||||| | | || | || ||| ||| | |||| | || Sbjct 242440 GACTTCCAGAGACTTCACGAAGTCTGCCAAGTC-GTTGTCAAGAACTTGAACAAGATCAT 242382 Query 105166 TGATAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 105224 |||| || | |||||| ||| || | | || | || | | ||||| || | Sbjct 242381 TGATGTCAACTATTACCCTGTTCCCGAAGCCAAGAGAAGC-AACTTCCGCCACCGACCTA 242323 Query 105225 TTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTG 105281 | | | ||||| |||||||| || |||| ||| | |||| ||| | |||| | Sbjct 242322 TCGCCGTTGGTGTCCAGGGTCTTGCTGATGCTTTCTTGGCTCTTCGTCTTC---CATTCG 242266 Query 105282 ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTC 105341 | || || || ||| | |||| | || || |||||||| || || ||||| | Sbjct 242265 ACTCTCCAGAGGCCAAGCACCTCAACATTCAAATCTTCGAGACCATCTACCATGCCGCAC 242206 Query 105342 TTGAGGC--GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399 | || |||| ||| | || |||||||||| | ||||| || ||||||||||| Sbjct 242205 TCACTGCTTCAGTT--GAGCTTGCCAAGGTTGATGGCACTTATGAGACATTTGAGGGTTC 242148 Query 105400 TCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA-GCTTCAC 105457 ||| || || |||||| | | | || | ||||||||||| || | |||| || | Sbjct 242147 TCCTGCCTC-CAAGGGCGAGTTGCAGTATGATATGTGGG-GTGTTACTCCAACAGATCTC 242090 Query 105458 TACGACTGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516 | || ||||| |||| | ||| | |||||| | | |||||||| || || | || Sbjct 242089 TGGGATTGGGACAGCT-TGAAGCAGAAAATCAAGCAACATGGTCTTCGCAATAGCTTGCT 242031 Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGAATGCTTTG 105575 | ||||| |||||||| ||| |||| |||| |||||| | ||||| ||||||| Sbjct 242030 TGTCGCTCCTATGCCAACTGCCAGCACCAGTCAAATTCTTGGCT-TCAATGAGTGCTTTG 241972 Query 105576 AACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 105634 | || || ||| | |||||||| ||| | | || || || ||||| | ||| Sbjct 241971 AGCCATATACGTCCAACATCTACTCT-CGTCGTGTTCTTGCTGGCGAGTTCCAAGTCGTC 241913 Query 105635 AA--CAAGCAT-CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 || || | | ||| |||| || || || ||||||||||| | | |||||| Sbjct 241912 AACCCATGGTTGCTCAAGGAT---CTTGTTGACATGGGTCTCTGGTCTGACAACATGAAG 241856 Query 105692 GATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATT 105751 | | || | | ||||| || ||||| || || | || ||| ||| || Sbjct 241855 AACCGTATCATTGCCGATGGTGGATCGATTCAGAACATCCCCAACATCCCAGCTGATATC 241796 Query 105752 AAGAAGTTGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTCATTGACATGGCCG 105809 ||| | ||| || |||||||||| ||| ||| | || | | ||||||| Sbjct 241795 AAGGCTCTTTACAAGACCGTTTGGGAAATCTCACAGCGAACCA--TCGTCCAAATGGCCG 241738 Query 105810 CAGATCGTGGTCGCTT-CATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCA 105868 | || |||||| |||| |||||| ||| ||| ||||| | |||| | ||| Sbjct 241737 CTGACCGTGGT-GCTTACATTGACCAATCACAATCGATGAACATTCACATGAAGGATCCC 241679 Query 105869 ACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGG 105928 || ||| |||| || | ||||||| | | |||||| |||||| ||||| || Sbjct 241678 ACAATGGGCAAGATCACCAGTATGCACTTCGCTGGCTGGAAGTTGGGTCTGAAAACTGGC 241619 Query 105929 ATGTATTACCTCCG 105942 ||||| || ||||| Sbjct 241618 ATGTACTATCTCCG 241605 >seq4 Length=1888314 Score = 141 bits (156), Expect = 1e-28 Identities = 169/224 (75%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792 |||||| ||||| | ||||| || || |||||| | |||||| || | |||| | | Sbjct 1224656 AGTTCCATGTATCAAGAAGAAGGCCGACTGGGCTGTCAAGTGGATTCAAGACAAGAACTC 1224597 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 | | |||||| | || ||| ||||||| || || ||||||||||||||| ||||| Sbjct 1224596 -TACATTTGCTCAACGTCTCGTCGCATTCGCCGCCGTCGAGGGTATCTTCTTCAGTGGTT 1224538 Query 94853 CCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 94911 ||||| ||| | || | ||| | |||||||| ||||| ||| | ||||| ||||||| Sbjct 1224537 CCTTC-GCGTCCATCTTCTGGTTGAAGAAGCGTGGTCTTATGGCTGGTCTTACCTTCTCC 1224479 Query 94912 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 || || || ||||||||||||||||| |||||| || ||||| Sbjct 1224478 AATGAACTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGC 1224435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260282356040