Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq4 251 2e-61 seq16 127 6e-24 seq1 114 4e-20 seq26 111 5e-19 seq37 107 6e-18 seq42 84.2 7e-11 >seq4 Length=1888314 Score = 251 bits (278), Expect = 2e-61 Identities = 497/733 (68%), Gaps = 13/733 (2%) Strand=Plus/Plus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 |||| ||||| |||||| | || ||||| ||||| || |||| | | | | |||||| Sbjct 923207 CCGCGATAGGTATCGATCTGGGAACTACCTATTCCTGCGTTGGTATCTTCCGCGATGATC 923266 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 | | ||||| ||||| || || || || ||| |||| || || || | |||||| || | Sbjct 923267 GAATCGAAATCATTGCCAACGACCAGGGAAACCGAACCACACCTTCCTTCGTTGCCTTCA 923326 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 |||| ||||||||| |||| || ||| | || || || |||| || || || | | Sbjct 923327 CCGACACTGAGCGTCTGATCGGAGATGCCGCCAAGAACCAAGTCGCCATGAACCCTCACA 923386 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACA 349434 |||| || || ||||| ||||| | || || | | || |||| | | | || Sbjct 923387 ATACAGTCTTCGATGCCAAGCGTTTGATCGGACGCAAGTTCGCTGATGCTGAGGTTCAGG 923446 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGAT---AAACCAAT 349491 ||||| | || || || || || ||||| | ||| ||| || ||| | Sbjct 923447 --CTGATATGAAGCACTTCCCATTCACTGTCATC------GACCGTGCCGGAAAGCCAGT 923498 Query 349492 TATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAAT 349551 ||||| ||||| | || ||||| | || ||||| ||| || ||||| || || || Sbjct 923499 CATTGAAGTTGAGTTCAAGGGTGAGAAGAAGCAATTCACACCTGAGGAAATCTCTTCGAT 923558 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGC 349611 ||| || || || ||| || | ||| || ||||| | |||| ||| || | | || Sbjct 923559 GGTCTTGGTCAAGATGCGTGAGACTGCGGAGGCATACCTTGGTGGAACTGTCAACAACGC 923618 Query 349612 TGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGG 349671 ||| | ||||| |||||||| || | ||| | || ||| || ||||| |||||||| Sbjct 923619 TGTCGTCACTGTCCCAGCCTACTTCACCGATTCACAACGTCAAGCCACAAAGGATGCTGG 923678 Query 349672 CAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGC 349731 || || || | ||||| || ||||| || || ||||| || || || || ||||| Sbjct 923679 TCTGATCGCCGGTCTCAATGTCCTGAGAATCATCAACGAACCAACCGCAGCCGCCATTGC 923738 Query 349732 ATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGG 349791 ||||| || || || | | ||| ||| ||| |||| || || ||| | ||||| Sbjct 923739 CTATGGTCTCGACAAGAAGGTTGAAGGTGAACGCAATGTTCTCATCTTCGATCTTGGTGG 923798 Query 349792 TGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAAC 349851 ||| ||||| ||||| || || | || |||| ||||| || || || || || | || Sbjct 923799 TGGAACTTTCGATGTTTCCCTCTTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCAC 923858 Query 349852 TGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGT 349911 ||||||||| || || | ||||| || || || || || | || ||| || ||||| Sbjct 923859 TGCTGGTGACACTCACTTGGGTGGCGAGGACTTCGACAACAGACTTGTTAACCACTTTGT 923918 Query 349912 TAAAGAATTTAAG 349924 ||| || || ||| Sbjct 923919 TAATGAGTTCAAG 923931 Score = 158 bits (174), Expect = 4e-33 Identities = 176/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | ||||| | ||||||||| ||||| |||||||| || | Sbjct 716108 TTTGCATACCACCTCGGAGACGAAGAACCAAATGAAGAGTCGACTCCTTTTGAATGTTGT 716167 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || || || || || ||||||||||| || ||||| ||||| || | ||||| | Sbjct 716168 AATCTGACAAAGTGCGGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTCTGCTGGT 716227 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || ||||||||||| || | || ||||| || || | || || | Sbjct 716228 CGGGTGGGATGCCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAG 716287 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||| || || || | |||||||| || | || || ||||| |||||||| Sbjct 716288 ATTCAACCTCCAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACAAAGATCTGCAT 716342 Score = 136 bits (150), Expect = 1e-26 Identities = 159/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | || || ||||| || |||||||| || ||||| |||| Sbjct 716620 TTTGCATACCGCCACGAAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTAT 716679 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||||| | || || || || ||||| || |||||||| ||||| | ||||| || | Sbjct 716680 AATCAGAAAGGGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGT 716739 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | || || ||||| || || || ||||| || ||| || || ||||| || | ||| || Sbjct 716740 CGGGTGGGATTCCCTCCTTGTCTTGAATCTT-GCTCTTGACGTTATCGATGGTATCCGAG 716798 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | ||||| ||||| || | ||||||||||| Sbjct 716799 GACTCAACCTCAAGAGTGATGGTCTTTCCGGT 716830 Score = 131 bits (144), Expect = 5e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | ||||| | ||| ||||| ||||| ||||| || || |||||| Sbjct 715888 CCACCACGGAGACGGAGAACCAAATGGAGAGTCGACTCCTTTTGGATGTTGTAATCACTC 715947 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | ||| |||||||| || | ||| || ||||||||||| | || ||||| || || || Sbjct 715948 AGTGTACGCCCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGTGGG 716007 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || || || || || | || ||||| ||||| | || || | || ||| Sbjct 716008 ATACCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCAATGGTGTCCGAAGACTCCACT 716067 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || | ||||| ||||||||||| | || || ||||| || ||||| Sbjct 716068 TCCAATGTAATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 716114 >seq16 Length=1327714 Score = 127 bits (140), Expect = 6e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || ||||||||||| ||||| || || || || ||||| || Sbjct 332080 CCACCACGGAGACGCAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAG 332139 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || ||||| || ||||| || ||||| ||||| || ||||| || || || ||| Sbjct 332140 AGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGA 332199 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 |||||||| || || || ||||| | || ||||| || || | ||| || | || || Sbjct 332200 ATTCCTTCCTTGTCTTGGATTTTGGACTTGACATTGTCGATGGTATCGGAAGACTCCACC 332259 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 || ||||| | ||||| || || || || || || || Sbjct 332260 TCGAGTGTGATAGTCTTGCCCGTGAGGGTCTTGACGAA 332297 >seq1 Length=2762476 Score = 114 bits (126), Expect = 4e-20 Identities = 221/326 (68%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 378121 TCAAATCCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGTC 378180 |||| ||||| || ||||| |||||||||||| | | | ||||| || || Sbjct 1592307 TCAAGACCATCTTCACCATAGACGAATTGAACAATATCGCCAAGAGAATTTCTAACCGTG 1592248 Query 378181 ATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCA 378240 || || | |||| | |||||| | || || | ||| || || || |||||| Sbjct 1592247 CCGTCGTACTTCGCCATAACATCTTCGAGAGCCTTGACAAGACGACGTTGGATGTAACCA 1592188 Query 378241 GTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAG 378300 |||| ||| || || ||||||||||| | ||| |||||||| |||||||||||||| Sbjct 1592187 GTTTCGGCAGTCTTGACAGCAGTATCAATAAGACCTTCACGACCAGCCATTGCATGGAAG 1592128 Query 378301 AATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCT 378360 || |||||||| || || | || | | | ||| |||||| || || | | | Sbjct 1592127 AAGAATTCAGTCGGCGTCAAACCTCGGAGGTAAGAATTCTCAACGAAGCCACGCGATTCA 1592068 Query 378361 GGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATT 378420 || |||| ||||| || || | || || | || |||| || ||| || | || || Sbjct 1592067 GGGGAATAATCATCCTTGGTGAAGTGGGGAAGAGTGCGATACTTAAAGCCGAAGGGGATG 1592008 Query 378421 CGTTTTCCATCAACATTCTGTTGACC 378446 || ||||| ||||| ||||||||| Sbjct 1592007 CGCTTTCCCTCAACGGACTGTTGACC 1591982 >seq26 Length=969302 Score = 111 bits (122), Expect = 5e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 ||||| || |||||||| || | || || |||||||||||||| ||||| |||||||| Sbjct 292270 TTTTGGATGTTATAATCGGAGAGGGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATC 292211 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | ||| || || || || |||||||| || || ||||| || || | || ||||| || Sbjct 292210 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 292151 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 || | ||| || | || || ||||| || | ||||| || || || || || || || Sbjct 292150 ATAGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 292092 >seq37 Length=479966 Score = 107 bits (118), Expect = 6e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 140544 GACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCA 140603 ||||| |||||||| || || || |||| || || | |||||||||||| || | |||| Sbjct 404102 GACTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGGCTATCTTCAAGTTGCTTACTAGCA 404161 Query 140604 AAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACA 140663 || || || | ||||| || || || || || || ||||||||||| || | || || Sbjct 404162 AAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGAATCTTGGACTTGACG 404221 Query 140664 TTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTT 140723 || || || | || || | |||||| || | || | |||||||| || | || || Sbjct 404222 TTGTCGATAGTGTCCGAAGATTCAACCTCCAAAGTGATAGTCTTTCCAGTCAAGGTCTTA 404281 Query 140724 ACAAAAATCTGCAT 140737 ||||| || ||||| Sbjct 404282 ACAAAGATTTGCAT 404295 >seq42 Length=298824 Score = 84.2 bits (92), Expect = 7e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 202735 GTAAATGGTTCAAAACATTCATTATTACCTAAAATTTGACTGGTACTAGCAGTTGGCATA 202794 ||| |||| ||||| || ||||| || | |||||||||||| || |||||||||||| Sbjct 241962 GTATATGGCTCAAAGCACTCATTGAAGCCAAGAATTTGACTGGTGCTGGCAGTTGGCATA 242021 Query 202795 GGTGCAACTAGTAAACTATTGCGAAGCCCATATT 202828 || || || || || ||||||||||| |||| || Sbjct 242022 GGAGCGACAAGCAAGCTATTGCGAAGACCATGTT 242055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253021592013