Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq42 275 7e-69 >seq42 Length=298824 Score = 275 bits (304), Expect = 7e-69 Identities = 1138/1764 (65%), Gaps = 67/1764 (4%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || || | |||||||||||| || || |||||| |||||| || | ||||||||| Sbjct 241602 GTACGGAGATAGTACATGCCAGTTTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTG 241661 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | |||| ||| | || | || |||| ||||| | ||| || || ||||| ||| Sbjct 241662 GTGATCTTGCCCATTGTGGGATCCTTCATGTGAATGTTCATCGATTGTGATTGGTCAATG 241721 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 || ||||| ||||| || ||||| | || || | || | || ||||| | |||| Sbjct 241722 TAAGCACCACGGTCAGCGGCCATTTGGACGATGGTTCGCTGTGAGATTTCCCAAACGGTC 241781 Query 78370 CGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGC--GCT-TGTA-CGCTCC--CACCG 78423 ||||| ||||| | || | |||||| | | | || | || ||| || || Sbjct 241782 TTGTAAAGAGCCTTGATATCAGCTGGGATGTTGGGGATGTTCTGAATCGATCCACCATCG 241841 Query 78424 GCTCGCACAATTTCATTCTTAAT-TTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCCG 78482 || | || ||||| || ||| | |||| || || | ||||||| Sbjct 241842 GCA---ATGATACGGTTCTTCATGTTGTCAGA-CCAGAGACCCATGTCAACAAGATCCTT 241897 Query 78483 GACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTT 78542 || || |||| | | ||||||||| || || || || ||||||||| Sbjct 241898 GAGCAACCATGGGTTGACGACTTGGAACTCGCCAGCAAGAACACGACGAGAGTAGATGTT 241957 Query 78543 GGTCGTGTACGGCTCGAAAGC-CTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCG 78601 || ||| || ||||| ||||| ||| ||| || | || || ||| ||| || | Sbjct 241958 GGACGTATATGGCTC-AAAGCACTCATTGAAGCCAAGAATTTGACTGGTGCTGGCAGTTG 242016 Query 78602 GCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAGGC 78661 |||| || ||||| || | ||| ||||||||||| |||||| | ||| | || Sbjct 242017 GCATAGGAGCGACAAGCAAGCTATTGCGAAGACCATGTTGCTTGATTTTCTGCTTCAAGC 242076 Query 78662 CGTCCCAA------AATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCT 78715 ||||||| | || | | | | |||||||| || || | |||| Sbjct 242077 TGTCCCAATCCCAGAGATCTGTTGGAGTAACACCCCACATATCATACTGCAACTCGCCCT 242136 Query 78716 CGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATG 78775 ||| || || || |||| || ||||| |||| || || ||||||| || || || Sbjct 242137 TGGAGGCAGGAGAACCCTCAAATGTCTCATAAGTGCCATCAACCTTGGCAAGCTCAACTG 242196 Query 78776 ACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCT 78835 | | || || || ||||| | | ||||||||| ||||||| | |||| Sbjct 242197 AAGCAGTGAGTGCGGCATGGTAGATGGTCTCGAAGATTTGAATGTTGAGGTGCTTGGCCT 242256 Query 78836 TGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGA 78895 | |||||| | ||| | || || ||| |||| || || |||||||| || | Sbjct 242257 CTGGAGAGTCGAATGGAAGACGAAGAGCCAAGAAAGCATCAGCAAGACCCTGGACACCAA 242316 Query 78896 TAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTC---GGGTAAAAGT 78952 ||||| ||||||||||| | |||||| | || | || |||| |||||| ||| Sbjct 242317 CGGCGATAGGTCGGTGGCGGAAGTTGCT-TCTCTTG--GCTTCGGGAACAGGGTAATAGT 242373 Query 78953 TCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACC-CGAGTCA--CCTCGTACAATT 79009 | ||| |||| ||||| ||| | |||| || | | || | |||| | | Sbjct 242374 TGACATCAATGATCTTGTTCAAGTT---CTTGACAACGACTTGGCAGACTTCGTGAAGTC 242430 Query 79010 TGGCGAAATCAAAAT----GAT-TTCCTTT-GATGAAAGTCGGTAGGCACAGCGATGCCA 79063 | ||| ||| || | | ||| | | || | || || ||| || || |||| Sbjct 242431 TCTGGAAGTCATAAGTGCCGTTGTTCATGTCGACATAGGTAGGAAGGGCAAGTGAAGCCA 242490 Query 79064 GGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAG 79123 |||||| ||||| ||| || || | | ||| | || || ||||| | || | Sbjct 242491 AGTTGCAGACGGCAACCTCATCTGGAGCACAGTACTCAACAATCTCAGTGCAGAGGTTCG 242550 Query 79124 ACGACTT--GATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTA 79181 | ||| |||||| |||| ||||||||||||||||| ||| || || |||||||| Sbjct 242551 AG--CTTCGGATGGTACCGAGATTCTTCTGGTTGCTCTTTCTGTTGCAAGCATCCTTGTA 242608 Query 79182 GCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCG 79241 |||| | || | || ||||| |||| || || | | || ||||| | | Sbjct 242609 AAGCATGAAGGGATTGCCAGTCTCGGTCTGAGCCTCCAGGATGGAGTACCAGAGCTTTTG 242668 Query 79242 GGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAA 79301 ||| || ||||| ||||||| | || | || ||| ||||| || Sbjct 242669 CGCCTTGATGG---TCTTG---CGACCCTTACCTTCGCGC-TCA--TACTGCTCGTAGAG 242719 Query 79302 AGCCTCC---------CCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAG 79352 |||||| ||||||||||| | || ||| |||||||| | |||||||||| Sbjct 242720 AGCCTCGAATTCATCGCCATAGACATCAGCCAAGCCTGGGCACTCATTGGGGCACATCAA 242779 Query 79353 GTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGT 79412 ||| || | | ||| ||||| || |||||| || || || ||||||||||| Sbjct 242780 AGTCCACTCGCCATTCTTTTCAACTCGCTTCATGAAAAGATCAGGAATCCACAGGGCGTA 242839 Query 79413 GAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTC 79472 |||||| || || || | |||||| | ||| || ||| || || || || | || Sbjct 242840 GAAGAGATCACGAGCTCGGACCTCCTCCTTGCCGTGATTCTTTCGAAGATCAAGGTACTC 242899 Query 79473 CATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCC 79532 | || ||||||||||| ||||| |||||||| ||||| | ||| |||||| || Sbjct 242900 GAAGACATCGGCGTGCCATGGCTCAAGATAGATAGCGAAAGCACCTGGTCGCTTGTTACC 242959 Query 79533 GCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTC 79592 || |||| ||||| || || ||||||||||| |||||||||||||| |||||||||| Sbjct 242960 ACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGACTCGGAGCATGGGGACGATGCCGTT 243019 Query 79593 GGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA--GTGG 79650 | | || || || || || | ||| | || || | ||||| | || | Sbjct 243020 CGAGTTACCATTTGTTCCTGCAATGTAGGCTCCGGTAGCGCGGA--TTCGATGAACGTTG 243077 Query 79651 ATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATG 79710 | || || || || | |||||| || ||||| ||| | || |||||||| Sbjct 243078 AGGCCAATTCCACCAGCATTCTTGGAAATCATGGCGCAAGTCTTCAATGTGTCGTAGATA 243137 Query 79711 CCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT-T 79769 || ||||| ||| |||||||| |||| ||||| || || | || || |||| Sbjct 243138 CCGTCGATACTGTCCTCCTTCATGTCGACAAGGAAACATGAAGAGAGTTG-GGCTTGTGG 243196 Query 79770 CGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATC 79829 ||||| || |||||| || || | || ||||||||| |||| ||| |||||||| Sbjct 243197 AGTACCAGCAGCGAAGAGAGTTGGGGAAGCATGCGTGAAGCACTTCTGGGACATCAGATT 243256 Query 79830 GTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAA 79889 ||| ||||| | | | || || || ||||| |||||||| || || ||||| | Sbjct 243257 GTATGTCTCAATCGCAGCCTCGATATCTTCACCGTGAATGCCGACTGCTACTCGCATAAT 243316 Query 79890 GAGGTACTG-GGGCGTCTCGCCGA 79912 | || || |||||| |||| || Sbjct 243317 CATGTGTTGTGGGCGT-TCGCAGA 243339 Score = 214 bits (236), Expect = 2e-50 Identities = 1116/1743 (64%), Gaps = 75/1743 (4%) Strand=Plus/Minus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGA----GACATA 19173 |||||||| || |||||||| || || || || || ||| | |||| |||||| Sbjct 243313 ATGCGAGTAGCAGTCGGCATTCACGGTGAAGATATC----GAGGCTGCGATTGAGACATA 243258 Query 19174 CGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTAC 19233 | | |||||| |||||||| ||||||||| || | || || || ||| || ||||| Sbjct 243257 CAATCTGATGTCCCAGAAGTGCTTCACGCATGCTTCCCCAACTCTCTTCGCTGCTGGTAC 243198 Query 19234 GA-ACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGG 19292 |||| || || | || |||||||| || | |||||||| ||||| || || | Sbjct 243197 TCCACAAGCC-CAACTCTCTTCATGTTTCCTTGTCGACATGAAGGAGGACAGTATCGACG 243139 Query 19293 GCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGA 19352 | |||||||| || | ||| ||||| || |||||| | || || || || Sbjct 243138 GTATCTACGACACATTGAAGACTTGCGCCATGATTTCCAAGAATGCTGGTGGAATTGGCC 243079 Query 19353 TCCAC--TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGC 19410 || || | |||||| ||| | | || | || || || || || || | Sbjct 243078 TCAACGTTCATCGAAT--CCGCGCTACCGGAGCCTACATTGCAGGAACAAATGG--TAAC 243023 Query 19411 -CGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAG 19468 ||| ||| |||||||| |||||||| |||||||||||||| || | ||||| |||| Sbjct 243022 TCGAACGGCATCGTCCCCATGCTCCGAGTCTTCAACAACACTGCTCGTTACGTTGACCAA 242963 Query 19469 GGGGGCGGCAAACG--CAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACG 19526 || || ||| || || | ||| ||||| ||||| || |||||||||||||| || | Sbjct 242962 GGTGGTAACAAGCGACCAGGTGCT--TTCGCTATCTATCTTGAGCCATGGCACGCCGATG 242905 Query 19527 TCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACC 19586 || | || | ||| || || || ||| || || | |||||| | || ||| || | Sbjct 242904 TCTTCGAGTACCTTGATCTTCGAAAGAATCACGGCAAGGAGGAGGTCCGAGCTCGTGATC 242845 Query 19587 TCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAAT 19646 ||||| ||| |||||||||| || || |||||| || ||||| ||| | | || | Sbjct 242844 TCTTCTACGCCCTGTGGATTCCTGATCTTTTCATGAAGCGAGTTGAAAAGAATGGCGAGT 242785 Query 19647 GGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCA 19706 || |||||||||| | || ||||| ||| | | || ||||| ||||| | ||| Sbjct 242784 GGACTTTGATGTGCCCCAATGAGTGCCCAGGCTTGGCTGATGTCTATGGCGATGAATTCG 242725 Query 19707 ATGAGTTGTACCGGACTTACGTAGCCC--AGGGCCGGTTCAAGAAGGTGGTCCGGGCCCG 19764 | | | ||| | || | ||| | ||| || || ||| || ||| | Sbjct 242724 AGGCTCTCTACGAGCAGTATG-AGCGCGAAGGTAAGGGTC-GCAAGACCATCAAGGCGCA 242667 Query 19765 GGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTA 19824 | ||||| || | |||| | ||| |||||| |||| || | |||| || Sbjct 242666 AAAGCTCTGGTACTCCATCCTGGAGGCTCAGACCGAGACTGGCAATCCCTTCATGCTTTA 242607 Query 19825 CAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATC--AAGTCGTCC 19882 |||||| || ||| ||| || |||||||| |||| | ||| ||| || Sbjct 242606 CAAGGATGCTTGCAACAGAAAGAGCAACCAGAAGAATCTCGGTACCATCCGAAG--CTCG 242549 Query 19883 AACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTG 19942 ||||| || ||||| || | ||| | || || ||| |||||| || || || Sbjct 242548 AACCTCTGCACTGAGATTGTTGAGTACTGTGCTCCAGATGAGGTTGCCGTCTGCAACTTG 242489 Query 19943 GCGTCCCTGTGCCTGCCGAC---TTTCG---TCAAGGCCTCCTCCTTCGACTTTGCCAAA 19996 || || || ||| || || | ||| | || | | | | ||||| | | Sbjct 242488 GCTTCACTTGCCCTTCCTACCTATGTCGACATGAACAACGGCACTTATGACTTCCAGAGA 242429 Query 19997 TTGTACGAGGTGACCCGGGTC---GTCACGCGTAATCTGAATCGCGTCATCGATCGGAAC 20053 | |||| || || ||| |||| | || |||| |||| ||| ||| Sbjct 242428 CTTCACGAAGTCTGCCAAGTCGTTGTCAAG---AACTTGAACAAGATCATTGATGTCAAC 242372 Query 20054 TTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATC 20110 | |||||| |||| || | | ||| || | |||||||| || ||||| | Sbjct 242371 TATTACCCTGTTCCCGAAGCCAAGAG-AAG--CAACTTCCGCCACCGACCTATCGCCGTT 242315 Query 20111 GGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCT--CATTCGACGATCCCA 20168 || |||||||| || || || | |||| || |||| | ||| |||||||| ||| Sbjct 242314 GGTGTCCAGGGTCTTGCTGATGCTTTCTTG--GCTCTTCGTCTTCCATTCGACTCTCCAG 242257 Query 20169 AGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAAT 20228 |||| | ||||||| ||||||||| || | ||||| || || ||| | | Sbjct 242256 AGGCCAAGCACCTCAACATTCAAATCTTCGAGACCATCTACCATGCCGCACTCACTGCTT 242197 Query 20229 CGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCG 20288 | || || ||||| | || ||| | || ||||| || |||| || || || ||| Sbjct 242196 CAGTTGAGCTTGCCAAGGTTGATGGCACTTATGAGACATTTGAGGGTTCTCCTGCCTCCA 242137 Query 20289 AGGGTATCCTCCAGCCGGACATGTGGGGCGTCACT----GAGA---ATGAGTTTTGGAGC 20341 |||| | ||| || |||||||| || ||| ||| || | || ||| | Sbjct 242136 AGGGCGAGTTGCAGTATGATATGTGGGGTGTTACTCCAACAGATCTCTGGGATTGGGA-C 242078 Query 20342 GCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATG 20401 | | ||| | |||||| || || |||||||| ||||| ||||| || ||| Sbjct 242077 AGCTTGAAGCAGAAAATCAAGCAACATGGTCTTCGCAATAGCTTGCTTGTCGCTCCTATG 242018 Query 20402 CCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAG-GCTTTCGAGCCGTACACGAC 20460 || || ||| ||| || || | || ||| ||| ||||| ||||| || ||| | Sbjct 242017 CCAACTGCCAGCACCAGTCAAATTCTTGGCTTCAATGAGTGCTTT-GAGCCATATACGTC 241959 Query 20461 CAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGT 20520 ||||||||||| |||||| || || || |||||| | || ||| || | Sbjct 241958 CAACATCTACTCTCGTCGTGTTCTTGCTGGCGAGTTCCAAGTCGTCAACCCATGGTTGCT 241899 Query 20521 CCGCGA-CTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAA---TGAAATTGTCC 20576 | || |||| | | || | | | ||||| ||| || ||||| | |||| || Sbjct 241898 CAAGGATCTTGTTG-ACATGGGTCTCTGGTCTGACAACATGAAGAACCGTATCATTG-CC 241841 Query 20577 GAGCCGGCGGGAGCG-TCCAG-GCAT--TGGATATCCCCCAGAACCTCAAGGACATTTAC 20632 || | ||| || | ||| ||| | ||||| | |||||| ||||| Sbjct 241840 GA---TGGTGGATCGATTCAGAACATCCCCAACATCCCAGCTGATATCAAGGCTCTTTAC 241784 Query 20633 AGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCC 20692 | |||||| ||||||||| ||||| | |||| || | ||||| || || || || || Sbjct 241783 AAGACCGTTTGGGAAATCTCACAGCGAACCATCGTCCAAATGGCCGCTGACCGTGGTGCT 241724 Query 20693 TACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTG 20752 ||||| ||||| || || ||| | || | |||| || |||| | ||| ||| | Sbjct 241723 TACATTGACCAATCACAATCGATGAACATTCACATGAAGGATCCCACAATGGGCAAGATC 241664 Query 20753 AGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGG 20812 | | ||||| | |||||| | ||| || || || |||||||||||||| || Sbjct 241663 ACCAGTATGCACTTCGCTGGCTGGAAGTTGGGTCTGAAAACTGGCATGTACTATCTCCGT 241604 Query 20813 ACC 20815 ||| Sbjct 241603 ACC 241601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524313184240