Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq42 179 4e-40 seq12 122 1e-22 seq4 109 6e-19 >seq42 Length=298824 Score = 179 bits (198), Expect = 4e-40 Identities = 505/764 (66%), Gaps = 30/764 (4%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCG--TGAGACGTACG 53252 ||||| || || | || || |||||||| || || || | | || |||||| ||| Sbjct 243313 ATGCGAGTAGCAGTCGGCATTCACGGTGAAGA-TAT-CGAGGCTGCGATTGAGACATACA 243256 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 | | ||| ||| |||| ||| ||||| || | ||||| || ||| |||||||| Sbjct 243255 ATCTGATGTCCCAGAAGTGCTTCACGCATGCTTCCCCAACTCTCTTCGCTGCTGGTACTC 243196 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || | || | || || ||||| || | |||||||| ||| |||||||| | Sbjct 243195 CACAAGCCCAACTCTCTTCATGTTTCCTTGTCGACATGAAGGAGGACAGTATCGACGGTA 243136 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || | ||| || ||| || |||||| | ||||| || || || Sbjct 243135 TCTACGACACATTGAAGACTTGCGCCATGATTTCCAAGAATGCTGGTGGAATTGGCCTCA 243076 Query 53433 AC--TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || | ||||| |||| || | ||| | || || || || || | | | Sbjct 243075 ACGTTCATCGAA--TCCGCGCTACCGGAGCCTACATTGCAGGAACAAATGGTAACTCGAA 243018 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || ||||| || |||||||| |||||||||||||| || || ||||| |||| ||||| Sbjct 243017 CGGCATCGTCCCCATGCTCCGAGTCTTCAACAACACTGCTCGTTACGTTGACCAAGGTGG 242958 Query 53551 TGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 | ||||| | ||| | | ||||| ||||| || ||||| ||||||||||| | | | Sbjct 242957 TAACAAGCGACCAGGTG-CTTTCGCTATCTATCTTGAGCCATGGCACGCCGATGTCTTCG 242899 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-T 53668 ||| || || || || |||||| || | || ||| | || ||||| || || | Sbjct 242898 AGTACCTTGATCTTCGAAAGAATCACGGCAAGGAGGAGGTCCGAGCTCGTGATCTCTTCT 242839 Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTAC 53728 || || ||||||||||| || || |||||| | || || ||| | | |||||| Sbjct 242838 AC-GCCCTGTGGATTCCTGATCTTTTCATGAAGCGAGTTGAAAAGAATGGCGAGTGGACT 242780 Query 53729 CTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGT-------- 53780 |||||||||| || |||||||| ||| | | |||||| || || || | Sbjct 242779 TTGATGTGCCCCAATGAGTGCCCAGGCTTGGCTGATGTCTATGGCGATGAATTCGAGGCT 242720 Query 53781 -TTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCG 53839 | ||||| |||| || | || || | |||| ||| |||| |||||||| Sbjct 242719 CTCTACGAGCAGTAT--GA-GCGCGAAGGTAAGGGTCGC------AAGACCATCAAGGCG 242669 Query 53840 CGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGC 53899 | || | ||| | | ||||| || ||| ||||| || | || | |||| Sbjct 242668 CAAAAGCTCTGGTACTCCATCCTGGAGGCTCAGACCGAGACTGGCAATCCCTTCATGCTT 242609 Query 53900 TACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 ||||||||| | |||| ||||||||||||||||| |||| Sbjct 242608 TACAAGGATGCTTGCAACAGAAAGAGCAACCAGAAGAATCTCGG 242565 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 ||||| |||||||| ||||| ||||| || || || ||||||| |||| || |||| Sbjct 241738 GCTGACCGTGGTGCTTACATTGACCAATCACAATCGATGAACATTCACATGAAGGATCCC 241679 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 || ||| |||| | | | |||||||| || |||||| ||| || || || || Sbjct 241678 ACAATGGGCAAGATCACCAGTATGCACTTCGCTGGCTGGAAGTTGGGTCTGAAAACTGGC 241619 Query 55907 ATGTACTATCTGCGGACC 55924 ||||||||||| || ||| Sbjct 241618 ATGTACTATCTCCGTACC 241601 >seq12 Length=1482706 Score = 122 bits (134), Expect = 1e-22 Identities = 201/285 (71%), Gaps = 14/285 (5%) Strand=Plus/Plus Query 117293 GGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGC 117352 |||| || | |||||| || ||||||| ||| |||||||| | || |||||||| | Sbjct 867253 GGTGAAAGTCTAGTGAAGATATAACGAGGGCTAGCAGCATCGCTACCTCCAGCAAGTCTG 867312 Query 117353 GTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGA 117412 ||||||| | ||| || || |||||| ||| | |||||| | ||| ||||| |||||| Sbjct 867313 CTACCGAAATTTCCGCTGGGTTCCAAGCAGTTGACGTTGTTTGAGCCAACAAAATTTTGA 867372 Query 117413 GCCAAGT----TGACAATCGTAC-CTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCT 117467 || ||| ||| | || || | | || ||| ||||| || || || || || | Sbjct 867373 GC-AAGACCAATGATAGTCATATGCATAGAAGCT----TCACCGTGATGGTAGGCGGTAT 867427 Query 117468 GCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACG--TCAGGTTCTTCTT 117525 |||| | ||||| || |||| | | ||||||||||||| ||| || || ||| Sbjct 867428 TCTCCCCAACGTAACCGGCCAATTCAACCACCTTCATGTC--ACGGACAAGATTACGCTT 867485 Query 117526 GAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 || ||| ||| | || ||||| | ||| | ||||| | |||||| Sbjct 867486 GAAGCAAGCAAACATGACCTTTCTCTGTCCAGGCTTGAAACCATC 867530 >seq4 Length=1888314 Score = 109 bits (120), Expect = 6e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACA 74848 |||||| || || | ||| |||| |||||| ||||||||||||||||| ||||||| Sbjct 1224473 TTCATTGGAGAAGGTAAGACCAGCCATAAGACCACGCTTCTTCAACCAGAAGATGGACGC 1224532 Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 ||||||||||||||||||||| || ||||| || || ||||| || ||||| || || Sbjct 1224533 GAAGGAACCACTGAAGAAGATACCCTCGACGGCGGCGAATGCGACGAGACGTTGAGCAAA 1224592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215514345800