Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq4 118 7e-22
seq26 111 1e-19
>seq4
Length=1888314
Score = 118 bits (130), Expect = 7e-22
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||||||||||| ||||||||| ||||| ||||| ||||| |||
Sbjct 715897 AGACGGAGAACCAAATGGAGAGTCGACTCCTTTTGGATGTTGTAATCACTCAGTGTACGC 715956
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || | ||| ||||| ||||| || || ||||| ||||| || || | ||||||
Sbjct 715957 CCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCC 716016
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || | || || | ||| ||||| ||||||||||| ||
Sbjct 716017 TTGTCTTGGATC-TTCGACTTGACATTGTCAATGGTGTCCGAAGACTCCACTTCCAATGT 716075
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || ||||| || || || ||||| || |||||
Sbjct 716076 AATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 716114
Score = 105 bits (116), Expect = 4e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | |||||| | || | |||||| || |||||| |||||||||||||| |||
Sbjct 716628 CCGCCACGAAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAGAA 716687
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| ||||| || || || || || || || || |||||||| || ||
Sbjct 716688 AGGGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGTGGG 716747
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| ||||||||||||| |||||
Sbjct 716748 ATTCCCTCCTTGTCTTGAATCTT 716770
Score = 98.7 bits (108), Expect = 6e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| ||||| | |||||||| ||||| ||||||||||||||| ||||||||
Sbjct 716116 CCACCTCGGAGACGAAGAACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGAC 716175
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || ||||||||||||| ||||| || || || | | ||| ||||| || ||
Sbjct 716176 AAAGTGCGGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGG 716235
Query 34600 ACTCCCTCCTTGTC 34613
| |||||||| ||
Sbjct 716236 ATGCCCTCCTTATC 716249
>seq26
Length=969302
Score = 111 bits (122), Expect = 1e-19
Identities = 88/106 (83%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576
||||||| ||||||||||| || || || || | ||||||||||| || |||||||| |
Sbjct 292272 CCTTTTGGATGTTATAATCGGAGAGGGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGA 292213
Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
| ||||||||||||||||| || | |||||||||||| ||||||
Sbjct 292212 TCAAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTT 292167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314729327660543
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |