Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq16 172 1e-37
seq4 172 1e-37
seq26 143 6e-29
seq42 102 2e-16
>seq16
Length=1327714
Score = 172 bits (190), Expect = 1e-37
Identities = 160/203 (79%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || |||||||| ||||| || |||||||| ||||| | || || | |||||
Sbjct 332095 AGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCC 332154
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| |||||||| |||||||||||||| || |||| ||||||||||||
Sbjct 332155 TCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCT 332214
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || || || || |||||||| || || || |||||||| ||||| |||
Sbjct 332215 TGGATTTTGGACTTGACATTGTCGATGGTATCGGAAGACTCCACCTCGAGTGTGATAGTC 332274
Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105
|| |||||||| ||||| || ||
Sbjct 332275 TTGCCCGTGAGGGTCTTGACGAA 332297
>seq4
Length=1888314
Score = 172 bits (190), Expect = 1e-37
Identities = 166/213 (78%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | || || | |||||| |||||||| || ||||||||||| || | ||
Sbjct 716346 TCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAG 716405
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|| | ||||| || || |||||||| |||||||| || |||||||||||||| ||||
Sbjct 716406 AGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAAT 716465
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|||||||||||||| ||||| |||||||| |||||||| || || ||| |||||
Sbjct 716466 GCCTTCCTTGTCCTGAATCTTCGACTTCACGTTGTCGATGGTATCGGAAGATTCGACCTC 716525
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
|||||||| ||||| || || || ||||| ||
Sbjct 716526 AAGAGTGATGGTCTTGCCAGTCAGGGTCTTGAC 716558
Score = 163 bits (180), Expect = 7e-35
Identities = 156/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| || || || || ||||| || || ||||||||||| | ||||||
Sbjct 716633 ACGAAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAGAAAGGGT 716692
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || |||||||| || |||||||| | |||||||||||| || || | |||
Sbjct 716693 GCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGTGGGATTCC 716752
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||| || ||||| || ||||| |||||||| || ||| |||||||| ||
Sbjct 716753 CTCCTTGTCTTGAATCTTGCTCTTGACGTTATCGATGGTATCCGAGGACTCAACCTCAAG 716812
Query 211073 AGTGATCGTCTTTCCCGTGA 211092
|||||| |||||||| ||||
Sbjct 716813 AGTGATGGTCTTTCCGGTGA 716832
Score = 150 bits (166), Expect = 4e-31
Identities = 155/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
|||||||| ||||| ||||| ||||| ||||| | | || | || ||||| || |||
Sbjct 716140 TGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGACAAAGTGCGGCCGTCTTCAAGTTGC 716199
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || ||||||||||| | || ||||| || || | || ||||| ||||| |||||
Sbjct 716200 TTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGGATGCCCTCCTTATCCTGAATCTTG 716259
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|| || || ||||||||||| || ||||||||| |||||||| |||||||| ||
Sbjct 716260 GACTTGACATTGTCGATGGTGTCCGAAGATTCAACCTCCAGAGTGATAGTCTTTCCAGTC 716319
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
| |||||| ||||| | ||||||
Sbjct 716320 AAAGTCTTAACAAAGATCTGCAT 716342
Score = 109 bits (120), Expect = 1e-18
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
|| ||||| ||||| ||||||||||| ||||| || || | ||||| |||| |||
Sbjct 715912 TGGAGAGTCGACTCCTTTTGGATGTTGTAATCACTCAGTGTACGCCCATCCTCCAATTGC 715971
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || || ||||| | || || ||||| || || | || |||||||| ||||||||
Sbjct 715972 TTACCAGCAAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTGGATCTTC 716031
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|| || || || |||||||| || || || || | || || |||||||| ||
Sbjct 716032 GACTTGACATTGTCAATGGTGTCCGAAGACTCCACTTCCAATGTAATGGTCTTTCCGGTC 716091
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
| |||||| ||||| | |||||
Sbjct 716092 AAAGTCTTGACAAAGATTTGCAT 716114
>seq26
Length=969302
Score = 143 bits (158), Expect = 6e-29
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||||||||||||||| | ||||| | |||||||| || ||||| || || |||||
Sbjct 292270 TTTTGGATGTTATAATCGGAGAGGGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATC 292211
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| || |||||||| || |||| ||| ||||||||||||||||| || || || |||
Sbjct 292210 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 292151
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| || || ||| || ||||| |||||||| ||||| ||||| || ||||| || ||
Sbjct 292150 ATAGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 292092
>seq42
Length=298824
Score = 102 bits (112), Expect = 2e-16
Identities = 194/278 (70%), Gaps = 12/278 (4%)
Strand=Plus/Plus
Query 178094 TTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCC 178150
||||| ||||||||||||| ||||| ||||| ||||| |||||||| ||| ||
Sbjct 242571 TTCTTCTGGTTGCTCTTTCTGTTGCAA---GCATCCTTGTAAAGCATGAAGGG-ATTGCC 242626
Query 178151 A-CCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209
| ||| | |||||| | || ||| | ||| |||| || || || |||||
Sbjct 242627 AGTCTCGGTCTGAGCCTCCAGGATGGAGTACCAGAGCTTTTGCGCCTTGATGGTCTTGCG 242686
Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269
| || ||||| ||| |||| | |||||| |||||||||| |||||||||||
Sbjct 242687 ACCCTTACCTTCGCGCTCATACTGCTCGTAGAGAGCCTCGAATTCATCGCCATAGACATC 242746
Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACT-GACCGTCTTCCTTC-ACT 178327
| | | || || |||||||||||| | | | |||||| | | |||| ||| |||
Sbjct 242747 AGCCAAGCCTGGGCACTCATTGGGGCACATCAAAGTCCACTCGCCATTCTT--TTCAACT 242804
Query 178328 CGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365
|| |||||||| || |||| |||| | ||| |||||
Sbjct 242805 CGCTTCATGAAAAGATCAGGAATCCACAGGGCGTAGAA 242842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159150945533915
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |