Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq16 172 1e-37 seq4 172 1e-37 seq26 143 6e-29 seq42 102 2e-16 >seq16 Length=1327714 Score = 172 bits (190), Expect = 1e-37 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || |||||||| ||||| || |||||||| ||||| | || || | ||||| Sbjct 332095 AGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCC 332154 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| |||||||| |||||||||||||| || |||| |||||||||||| Sbjct 332155 TCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCT 332214 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || || |||||||| || || || |||||||| ||||| ||| Sbjct 332215 TGGATTTTGGACTTGACATTGTCGATGGTATCGGAAGACTCCACCTCGAGTGTGATAGTC 332274 Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105 || |||||||| ||||| || || Sbjct 332275 TTGCCCGTGAGGGTCTTGACGAA 332297 >seq4 Length=1888314 Score = 172 bits (190), Expect = 1e-37 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | |||||| |||||||| || ||||||||||| || | || Sbjct 716346 TCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAG 716405 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| || || |||||||| |||||||| || |||||||||||||| |||| Sbjct 716406 AGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAAT 716465 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||||| ||||| |||||||| |||||||| || || ||| ||||| Sbjct 716466 GCCTTCCTTGTCCTGAATCTTCGACTTCACGTTGTCGATGGTATCGGAAGATTCGACCTC 716525 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 |||||||| ||||| || || || ||||| || Sbjct 716526 AAGAGTGATGGTCTTGCCAGTCAGGGTCTTGAC 716558 Score = 163 bits (180), Expect = 7e-35 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || || || || ||||| || || ||||||||||| | |||||| Sbjct 716633 ACGAAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAGAAAGGGT 716692 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || |||||||| || |||||||| | |||||||||||| || || | ||| Sbjct 716693 GCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGTGGGATTCC 716752 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| || ||||| || ||||| |||||||| || ||| |||||||| || Sbjct 716753 CTCCTTGTCTTGAATCTTGCTCTTGACGTTATCGATGGTATCCGAGGACTCAACCTCAAG 716812 Query 211073 AGTGATCGTCTTTCCCGTGA 211092 |||||| |||||||| |||| Sbjct 716813 AGTGATGGTCTTTCCGGTGA 716832 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||| ||||| ||||| ||||| ||||| | | || | || ||||| || ||| Sbjct 716140 TGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGACAAAGTGCGGCCGTCTTCAAGTTGC 716199 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || ||||||||||| | || ||||| || || | || ||||| ||||| ||||| Sbjct 716200 TTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGGATGCCCTCCTTATCCTGAATCTTG 716259 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || ||||||||||| || ||||||||| |||||||| |||||||| || Sbjct 716260 GACTTGACATTGTCGATGGTGTCCGAAGATTCAACCTCCAGAGTGATAGTCTTTCCAGTC 716319 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | |||||| ||||| | |||||| Sbjct 716320 AAAGTCTTAACAAAGATCTGCAT 716342 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || ||||| ||||| ||||||||||| ||||| || || | ||||| |||| ||| Sbjct 715912 TGGAGAGTCGACTCCTTTTGGATGTTGTAATCACTCAGTGTACGCCCATCCTCCAATTGC 715971 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| | || || ||||| || || | || |||||||| |||||||| Sbjct 715972 TTACCAGCAAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTGGATCTTC 716031 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || || |||||||| || || || || | || || |||||||| || Sbjct 716032 GACTTGACATTGTCAATGGTGTCCGAAGACTCCACTTCCAATGTAATGGTCTTTCCGGTC 716091 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | |||||| ||||| | ||||| Sbjct 716092 AAAGTCTTGACAAAGATTTGCAT 716114 >seq26 Length=969302 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||||||||| | ||||| | |||||||| || ||||| || || ||||| Sbjct 292270 TTTTGGATGTTATAATCGGAGAGGGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATC 292211 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || |||||||| || |||| ||| ||||||||||||||||| || || || ||| Sbjct 292210 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 292151 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || || || ||| || ||||| |||||||| ||||| ||||| || ||||| || || Sbjct 292150 ATAGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 292092 >seq42 Length=298824 Score = 102 bits (112), Expect = 2e-16 Identities = 194/278 (70%), Gaps = 12/278 (4%) Strand=Plus/Plus Query 178094 TTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCC 178150 ||||| ||||||||||||| ||||| ||||| ||||| |||||||| ||| || Sbjct 242571 TTCTTCTGGTTGCTCTTTCTGTTGCAA---GCATCCTTGTAAAGCATGAAGGG-ATTGCC 242626 Query 178151 A-CCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209 | ||| | |||||| | || ||| | ||| |||| || || || ||||| Sbjct 242627 AGTCTCGGTCTGAGCCTCCAGGATGGAGTACCAGAGCTTTTGCGCCTTGATGGTCTTGCG 242686 Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269 | || ||||| ||| |||| | |||||| |||||||||| ||||||||||| Sbjct 242687 ACCCTTACCTTCGCGCTCATACTGCTCGTAGAGAGCCTCGAATTCATCGCCATAGACATC 242746 Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACT-GACCGTCTTCCTTC-ACT 178327 | | | || || |||||||||||| | | | |||||| | | |||| ||| ||| Sbjct 242747 AGCCAAGCCTGGGCACTCATTGGGGCACATCAAAGTCCACTCGCCATTCTT--TTCAACT 242804 Query 178328 CGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 || |||||||| || |||| |||| | ||| ||||| Sbjct 242805 CGCTTCATGAAAAGATCAGGAATCCACAGGGCGTAGAA 242842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150945533915