Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq4 98.7 7e-16
seq26 87.8 1e-12
seq16 86.0 4e-12
>seq4
Length=1888314
Score = 98.7 bits (108), Expect = 7e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || ||||| || | || ||||| || |||||||| || ||||| || ||
Sbjct 716342 ATGCAGATCTTTGTTAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTTGAATCTTCG 716283
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | || || || || || | || || || ||
Sbjct 716282 GACACCATCGACAATGTCAAGTCCAAGA-TTCAGGATAAGGAGGGCATCCCACCCGACCA 716224
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || || || || || ||||| ||||||| |||||||| ||||||||
Sbjct 716223 GCAGAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCCGCACTTTGTCAGATTACAA 716164
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| ||||| ||||| || | ||||| |||
Sbjct 716163 CATTCAAAAGGAGTCGACTCTTCATTTGGTT 716133
>seq26
Length=969302
Score = 87.8 bits (96), Expect = 1e-12
Identities = 129/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679
||||| || ||||| ||||| || || |||||||| || || || ||| | || ||| |
Sbjct 292092 TTCGTCAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGATACTATC 292151
Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738
|| ||| | || | || | | ||||| || || | || || || |||||||||||
Sbjct 292152 GACAATGTCAAGTCCAAGA-TCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTT 292210
Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798
|| |||||||| || ||||| ||||| | || || | |||||| ||||| |||||
Sbjct 292211 GATCTTTGCCGGAAAGCAACTTGAAGATGGCCGTACCCTCTCCGATTATAACATCCAAAA 292270
>seq16
Length=1327714
Score = 86.0 bits (94), Expect = 4e-12
Identities = 134/189 (71%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679
||||| || ||||||||||| || || ||||| ||||| || || || | || || |
Sbjct 332297 TTCGTCAAGACCCTCACGGGCAAGACTATCACACTCGAGGTGGAGTCTTCCGATACCATC 332238
Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738
|| ||| | || | |||| | ||||| ||||| | || || || ||||| || |
Sbjct 332237 GACAATGTCAAGTCCAAAA-TCCAAGACAAGGAAGGAATTCCACCCGACCAACAACGCCT 332179
Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798
|| || || ||||| ||||| || || | |||||| | |||||||||||| || ||
Sbjct 332178 GATCTTCGCTGGCAAGCAACTCGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAA 332119
Query 23799 AGAGTCCAC 23807
||||| ||
Sbjct 332118 GGAGTCGAC 332110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338009307516068
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |