Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq16 159 8e-34
seq4 141 2e-28
seq26 107 5e-18
>seq16
Length=1327714
Score = 159 bits (176), Expect = 8e-34
Identities = 154/198 (78%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | |||||| || || ||||| || || || |||| |||||||||| | |||
Sbjct 332085 ACGGAGACGCAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGT 332144
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || || ||||| ||||||||||| || |||||||||||||| ||||| ||
Sbjct 332145 GCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGAATTCC 332204
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||||||| || ||| ||| |||||||| || || | ||||| || |
Sbjct 332205 TTCCTTGTCTTGGATTTTGGACTTGACATTGTCGATGGTATCGGAAGACTCCACCTCGAG 332264
Query 225672 CGTGATCGTCTTGCCCGT 225689
||||| |||||||||||
Sbjct 332265 TGTGATAGTCTTGCCCGT 332282
>seq4
Length=1888314
Score = 141 bits (156), Expect = 2e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|||||||| || || ||||||| |||||||| || || | |||||| || | |||
Sbjct 715912 TGGAGAGTCGACTCCTTTTGGATGTTGTAATCACTCAGTGTACGCCCATCCTCCAATTGC 715971
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| ||||| ||||| | ||| || |||||||| || ||||| |||||||||||||||||
Sbjct 715972 TTACCAGCAAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTGGATCTTC 716031
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
||| ||| || |||||||| || | ||||| || || || || ||||| || |||
Sbjct 716032 GACTTGACATTGTCAATGGTGTCCGAAGACTCCACTTCCAATGTAATGGTCTTTCCGGTC 716091
Query 225691 AAAGTTTTTATGAACACTTGCAT 225713
||||| || | || | ||||||
Sbjct 716092 AAAGTCTTGACAAAGATTTGCAT 716114
Score = 136 bits (150), Expect = 9e-27
Identities = 143/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|| ||||| || || ||||| | |||||||| | |||||| | || ||||| || |||
Sbjct 716140 TGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGACAAAGTGCGGCCGTCTTCAAGTTGC 716199
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| |||||||||||||||| || |||||||| || || || ||||| || || |||||
Sbjct 716200 TTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGGATGCCCTCCTTATCCTGAATCTTG 716259
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
||| ||| ||||||||||| || | ||| || || | ||||| ||||| || |||
Sbjct 716260 GACTTGACATTGTCGATGGTGTCCGAAGATTCAACCTCCAGAGTGATAGTCTTTCCAGTC 716319
Query 225691 AAAGTTTT 225698
||||| ||
Sbjct 716320 AAAGTCTT 716327
Score = 131 bits (144), Expect = 4e-25
Identities = 143/190 (75%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| || ||||| || || |||| || || |||| | ||||| |||||
Sbjct 716359 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGAGTTCGGCCATCC 716418
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| || |||||||| || ||||||||||| || ||||| |||||||||||
Sbjct 716419 TCAAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCCTTGTCC 716478
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| |||||| |||||||| || || | ||| || || | ||||| |||
Sbjct 716479 TGAATCTTCGACTTCACGTTGTCGATGGTATCGGAAGATTCGACCTCAAGAGTGATGGTC 716538
Query 225682 TTGCCCGTCA 225691
||||| ||||
Sbjct 716539 TTGCCAGTCA 716548
Score = 114 bits (126), Expect = 3e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||||| || ||||| || || || || || | || ||||| | | ||
Sbjct 716633 ACGAAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAGAAAGGGT 716692
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| ||||||||||| | |||||||||||||| || || ||
Sbjct 716693 GCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGTGGGATTCC 716752
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||| ||||| ||| || |||||||| || |||| || || || |
Sbjct 716753 CTCCTTGTCTTGAATCTTGCTCTTGACGTTATCGATGGTATCCGAGGACTCAACCTCAAG 716812
Query 225672 CGTGATCGTCTTGCCCGT 225689
||||| ||||| || ||
Sbjct 716813 AGTGATGGTCTTTCCGGT 716830
>seq26
Length=969302
Score = 107 bits (118), Expect = 5e-18
Identities = 122/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
||||||| || ||||||| | || | |||||||| || ||||| || || |||||
Sbjct 292270 TTTTGGATGTTATAATCGGAGAGGGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATC 292211
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| || |||||||| || ||||| || |||||||| |||||||| ||| ||| |||
Sbjct 292210 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 292151
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|| || || |||| || || || | ||||| |||||||||||
Sbjct 292150 ATAGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGT 292107
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192530115169274
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |