Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq42 338 9e-88 seq4 113 6e-20 >seq42 Length=298824 Score = 338 bits (374), Expect = 9e-88 Identities = 1337/2069 (65%), Gaps = 57/2069 (3%) Strand=Plus/Plus Query 75377 GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 75436 || ||||| || |||| || || | | ||||| ||||||||||| |||||||| ||| Sbjct 241572 GTAAACTGGATAGGAGCTGAAGCAGCCATGGTACGGAGATAGTACATGCCAGTTTTCAGA 241631 Query 75437 CCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATA 75496 |||| |||| || ||| ||||| || || | ||| | ||||| || Sbjct 241632 CCCAACTTCCAGCCAGCGAAGTGCATACTGGTGATCTTGCCCATTGTGGGATCCTTCATG 241691 Query 75497 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 75556 ||||| |||||||| || ||| || ||| |||| || | ||||| ||||||| | Sbjct 241692 TGAATGTTCATCGATTGTGATTGGTCAATGTAAGCACCACGGTCAGCGGCCATTTGGACG 241751 Query 75557 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGA 75616 ||||| || | |||||||||| || ||| ||| ||||||||| |||| | Sbjct 241752 ATGGTTCGCTGTGAGATTTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGGATG 241811 Query 75617 TTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTC 75673 || | | || ||||| ||||| ||||| | || || ||||| || | ||| | Sbjct 241812 TTGGGGATGTTCTGAATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTGTCAGAC 241871 Query 75674 CACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCA 75733 || | | || | | | | || | || || || | ||| || || ||| Sbjct 241872 CAGAGACCCATGTCAACAAGATCCTTGAGCAACCATGGGTTGACGACTTGGAACTCGCCA 241931 Query 75734 GACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 75793 | | || | |||| ||| || || |||||||| || | | |||||| || Sbjct 241932 GCAAGAACACGACGAGAGTAGATGTTGGACGTATATGGCTCAAAGCACTCATTGAAGCCA 241991 Query 75794 AAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 75853 | ||||||| || ||||| |||||||| || || | || ||||| | |||||| Sbjct 241992 AGAATTTGACTGGTGCTGGCAGTTGGCATAGGAGCGACAAGCAAGCTATTGCGAAGACCA 242051 Query 75854 TGTGTTCTGATTTTAT-CTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATC 75912 ||| ||||||| | ||| || | | ||||||||| ||||||| ||| |||| | Sbjct 242052 TGTTGCTTGATTTTCTGCTTCAAGCTGTC-CCAATCCCAGAGATCTGTTGGAGTAACACC 242110 Query 75913 CCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGT 75972 ||| | ||| || || | || ||| ||| || || | | |||| || ||||| Sbjct 242111 CCACATATCATACTGCAACTCGCCCTTGGAGGCAGGAGAACCCTCAAATGTCTCATAAGT 242170 Query 75973 CCCGTCCTTTTCAGCTAGTTCGCAACTC--GCCTCTAACGCACCGTAATAAATTGTTTCG 76030 || || | || || || |||| || | || | | || || || ||| Sbjct 242171 GCCATCAACCTTGGCAAGCTC--AACTGAAGCAGTGAGTGCGGCATGGTAGATGGTCTCG 242228 Query 76031 AAAATCTTCTTATTAAGAT-CTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAG--A 76087 || || | | || || | |||| || || || || || ||| | | || || | Sbjct 242229 AAGATTTGAATGTTGAGGTGCTTG-GCCTCTGGAGAGTCGAATGGAAGACG-AAGAGCCA 242286 Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAA 76147 | ||| ||||| || || ||||| || |||| | ||||||| || | ||| Sbjct 242287 AGAAA-GCATCAGCAAGACCCTGGACACCAACGGCGATAGGTCGGTGGCGGAAGTTGCTT 242345 Query 76148 ATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACA 76207 | | ||||| |||| ||||||||| || | ||| || || || || | || ||||| Sbjct 242346 CTCTTGGCTTCGGGAACAGGGTAATAGTTGACATCAATGATCTTGTTCAAGTTCTTGACA 242405 Query 76208 ACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTATCA------CA 76261 || |||| || || | ||| | | || ||| | | || | ||| || Sbjct 242406 ACGACTTGGCAGACTTCGTGAAGTCTCTGGAAGTCATAAGTGCCGTTGTTCATGTCGACA 242465 Query 76262 AACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCA--- 76318 | || ||| || | || || | || || ||||| ||||||| | | ||| Sbjct 242466 TAGGTAGGAAGGGCAAGTGAAGCCAAGTTGCAGACGGCAACCTCATCTGGA---GCACAG 242522 Query 76319 TATTGTATTATCTCCGTGCATAGATTACTACACTT--GATAGTTCCAAGATTTTGTTGGT 76376 || | | ||||| ||||| || || | | ||| ||| || || ||||| | |||| Sbjct 242523 TACTCAACAATCTCAGTGCAGAGGTT-CGAG-CTTCGGATGGTACCGAGATTCTTCTGGT 242580 Query 76377 TGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTG 76436 |||||||| |||| || | ||||| ||||| | || ||| | ||||| || |||| | Sbjct 242581 TGCTCTTTCTGTTGCAAGCATCCTTGTAAAGCATGAAGGGATTGCCAGTCTCGGTCTGAG 242640 Query 76437 ATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCT- 76495 || | || || | ||||| || | || | | || | ||| | ||| || Sbjct 242641 CCTCCAGGATGGAGTACCAGAG--CTTTTGCGCCT-TGATGGTCTTGCGACCCTTACCTT 242697 Query 76496 --CTTTCATATTGT--GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 | ||||| || ||| | | || || |||||||| || | |||||| |||| || Sbjct 242698 CGCGCTCATACTGCTCGTAGAGAGCC--TCGAATTCATCGCCATAGACATCAGCCAAGCC 242755 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 || || ||||| || |||||||| | |||||| |||| | | ||| || ||||| || Sbjct 242756 TGGGCACTCATTGGGGCACATCAAAGTCCACTCGCCATTCTTTTCAACTCGCTTCATGAA 242815 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671 |||||||| ||||| || || || ||||| || | || || || || || Sbjct 242816 AAGATCAGGAATCCACAGGGCGTAGAAGAGATCACGAGCTCGGACCTCCTCCTTGCCGTG 242875 Query 76672 ATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 ||||||| |||||| ||| |||| | | ||| | |||||||| || ||||| || || Sbjct 242876 ATTCTTTCGAAGATCAAGGTACTCGAAGACATCGGCGTGCCATGGCTCAAGATAGATAGC 242935 Query 76732 CATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAAC 76791 | | |||| ||||| || ||||| || || || | || | |||||||| || | || Sbjct 242936 GAAAGCACCTGGTCGCTTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGAC 242995 Query 76792 TCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACA 76851 || | ||| || | |||||||| || ||||||||||||| | ||| || ||| Sbjct 242996 TCGGAGCATGGGGACGATGCCGTTCGAGTTACCATTTGTTCCTGCAATGTAGGCTCCGGT 243055 Query 76852 TGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA 76911 || || || | || ||||| ||||| || || | || || || | || || Sbjct 243056 AGCGCGGATTCGATGAACGTTGAGGCCAATTCCACCAGCATTCTTGGAAATCATGGCGCA 243115 Query 76912 GCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACA 76971 ||||||||||| ||||| || || ||||| || ||| |||||| | ||| ||||| Sbjct 243116 AGTCTTCAATGTGTCGTAGATACCGTCGATACTGTCCTCCTTCATGTCGACAAGGAAACA 243175 Query 76972 GCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAA 77031 ||| | ||| || ||| || ||| || | || || || ||||| ||||| Sbjct 243176 TGAAGAGAGTTGGGCTTGTGGAGTACCAGCAGCGAAGAGAGTTGGGGAAGCATGCGTGAA 243235 Query 77032 CCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAA 77090 || || | || | ||||||||||| ||||| | || || ||||| || | |||| Sbjct 243236 GCACTTCTGGGACATCAGATTGTATGTCTCAATCGCAGCCTCGATATCTTCACCG-TGAA 243294 Query 77091 TTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAG-TCTTATTATTTATT 77149 | || || || || ||||| | ||| || || || ||||| ||| |||| ||| | Sbjct 243295 TGCCGACTGCTACTCGCATAATCATGTGTTGTGGGCGTTC-GCAGATCTTGCCATTGAGG 243353 Query 77150 TTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTC 77207 | | ||||||| || | ||| || || ||||| || | ||| ||||| |||| Sbjct 243354 CGGAGGAGGTATGATCGCTCGAGAGTCTTGAAGCCAAAGTATTGGTAATTGAAA--TCTC 243411 Query 77208 TTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCATGACAG 77267 ||||| | |||| | ||||| |||| ||| | ||| |||| | | || | Sbjct 243412 GGTCGTAGACAATAGCGGAATTAAGTTCTGCCTCGTGCTTGATAAC---ACACTTGTATG 243468 Query 77268 TGG--TAG-AAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAAGT 77324 ||| | | || || ||||| | | ||||| |||||| || ||||| | | || Sbjct 243469 TGGCCTCGCTGATCATAGGAGAAAGCTTGCCATTCCGAGGATTGACGTAGTTGTAGAGGT 243528 Query 77325 CTTCCATTAC-GTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATT 77383 || || || |||| || | | || || || | |||||| || || || || || ||| Sbjct 243529 CTGATATCACAGTCGAGAACT-GCTTCTTGGTCTGCTTGTGGAGGTTGGAGACTGCAATT 243587 Query 77384 CTAGCAGCTAGAATTGCATAGTCAGGATG 77412 | ||||| || || |||||||| ||||| Sbjct 243588 CGTGCAGCGAGGATGGCATAGTCGGGATG 243616 >seq4 Length=1888314 Score = 113 bits (124), Expect = 6e-20 Identities = 293/443 (66%), Gaps = 4/443 (1%) Strand=Plus/Plus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||||||||| ||||| || || ||||| || || ||||| ||||| | | || || || Sbjct 1224140 TTTTTGGTAGTCACCAACGCGCTTCTCAAAGAAGTTAGTCTTGCCAGCGAGCGAGATGTT 1224199 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 |||||||| ||||| || || | | || || | || | | || | | || Sbjct 1224200 CTCCATAAAGTCAAATGGGTTGGCAGACTTGTAGACCTTCTCATTGCCGAGGGCAAGAAG 1224259 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 ||| | ||| || ||||| || || || ||||||| | | ||||| || | ||| Sbjct 1224260 CAGACGATCAGCGACGAACTCGATGTATTGCTTCATCAGATTCGAGTTCATGCCAAGGAG 1224319 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 | || |||||||| || | |||||||| ||||| |||||| || | || | Sbjct 1224320 TGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCTTCGGTAATGA- 1224378 Query 46578 CGATGTT--ACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCA 46635 || | || || | || || ||||| | ||| |||| || || | | || ||| Sbjct 1224379 CG-TCTTGGACAGCTTGCTTGCTTGGGCGGTGCTTCAAGTGAGAGAAGAGAAGGCAAGCA 1224437 Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695 || || || || || || || | | || | ||| || || || || || |||| | Sbjct 1224438 AAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGTTCATTGGAGAAGGTAAGACCAGCC 1224497 Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCT 46755 || || |||||||| || | ||| || || | |||||| || ||| ||||| || || Sbjct 1224498 ATAAGACCACGCTTCTTCAACCAGAAGATGGACGCGAAGGAACCACTGAAGAAGATACCC 1224557 Query 46756 TCTACAGCCGCGAATGCGACAAG 46778 || || || ||||||||||| || Sbjct 1224558 TCGACGGCGGCGAATGCGACGAG 1224580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933767270720