Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq16 138 3e-27 seq4 134 3e-26 seq26 93.3 1e-13 >seq16 Length=1327714 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||||||||| ||||| || |||||||||||||||| | ||| | ||||| Sbjct 332095 AGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCC 332154 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | || ||||| | | ||||||||||| ||| Sbjct 332155 TCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCT 332214 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| |||||| | || | | | || ||| ||| || || || || ||||| Sbjct 332215 TGGATTTTGGACTTGACATTGTCGATGGTATCGGAAGACTCCACCTCGAGTGTGATAGTC 332274 Query 152073 TTGCCCGTGAGAGTCTTCACGAAG 152096 ||||||||||| ||||| |||||| Sbjct 332275 TTGCCCGTGAGGGTCTTGACGAAG 332298 >seq4 Length=1888314 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||||||||| ||||| ||||| ||||||||||| | ||||| | || ||| Sbjct 716131 AGAACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGACAAAGTGCGGCCGTCT 716190 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||||||||| ||||||||||| | | ||| || ||||| || Sbjct 716191 TCAAGTTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGGATGCCCTCCTTATCC 716250 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || |||||| | || | | |||| ||| || || || ||||| ||||| Sbjct 716251 TGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGATTCAACCTCCAGAGTGATAGTC 716310 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | |||||| || |||| |||||| Sbjct 716311 TTTCCAGTCAAAGTCTTAACAAAGATCTGCAT 716342 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||| ||||| ||||| ||||||||||||||||| | || | Sbjct 715896 GAGACGGAGAACCAAATGGAGAGTCGACTCCTTTTGGATGTTGTAATCACTCAGTGTACG 715955 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||| || | || || || ||||| | | ||||||||| | | ||| || || Sbjct 715956 CCCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTC 716015 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || |||||| | || | | |||| ||| ||| ||||| | || Sbjct 716016 CTTGTCTTGGATCTTCGACTTGACATTGTCAATGGTGTCCGAAGACTCCACTTCCAATGT 716075 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || || | |||||| || |||| ||||| Sbjct 716076 AATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 716114 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||| || ||||| || |||||||| || |||| | ||||| Sbjct 716352 GAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGAGTTCG 716411 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || ||||||||||| || | || ||||| | | || ||||| Sbjct 716412 GCCATCCTCAAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTC 716471 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || || || | || | | | || ||| || || |||||||| Sbjct 716472 CTTGTCCTGAATCTTCGACTTCACGTTGTCGATGGTATCGGAAGATTCGACCTCAAGAGT 716531 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 || || ||||| || || ||||| |||| Sbjct 716532 GATGGTCTTGCCAGTCAGGGTCTTGACGA 716560 >seq26 Length=969302 Score = 93.3 bits (102), Expect = 1e-13 Identities = 131/182 (72%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGA 151974 ||||||||||| ||||||| | || | |||||||| || ||||| ||||| |||| Sbjct 292270 TTTTGGATGTTATAATCGGAGAGGGTACGGCCATCTTCAAGTTGCTTT--CCGGCAAAGA 292213 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | | | ||| ||||||| | ||||| ||||| || || || || |||||| | | Sbjct 292212 TCAAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 292153 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | | || || ||| || |||||||| || || |||||||| || ||||| |||| Sbjct 292152 CGATAGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 292093 Query 152095 AG 152096 || Sbjct 292092 AG 292091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819750383641