Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq4 159 7e-34
seq26 152 1e-31
seq16 150 4e-31
seq37 138 2e-27
>seq4
Length=1888314
Score = 159 bits (176), Expect = 7e-34
Identities = 166/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || || || |||| || | ||| || || |||||||| ||||| |
Sbjct 716343 ACCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGA 716402
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||||||||| ||||| || ||||| ||||| | ||||||||||||| ||
Sbjct 716403 GAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGG 716462
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || |||||||| || ||||| | || ||| | ||||| || || |||| ||||||
Sbjct 716463 AATGCCTTCCTTGTCCTGAATCTTCGACTTCACGTTGTCGATGGTATCGGAAGATTCGAC 716522
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089
|| |||||||| ||||| || |||| ||||| ||||
Sbjct 716523 CTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACGA 716560
Score = 158 bits (174), Expect = 3e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || || || |||| ||| | || || |||||||||||||| |||
Sbjct 715888 CCACCACGGAGACGGAGAACCAAATGGAGAGTCGACTCCTTTTGGATGTTGTAATCACTC 715947
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || || |||||||| | ||| || || ||||||||||| || || ||||| ||
Sbjct 715948 AGTGTACGCCCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGTGGG 716007
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
||||||||||||||||||||||| | || || | || || |||||||||| || |||
Sbjct 716008 ATACCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCAATGGTGTCCGAAGACTCCACT 716067
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | || || ||||| || ||||||||||| || || || |||||
Sbjct 716068 TCCAATGTAATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 716114
Score = 145 bits (160), Expect = 2e-29
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || ||||| |||| ||| | || || ||||| |||||||| || |
Sbjct 716115 ACCACCTCGGAGACGAAGAACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGA 716174
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| |||||||| || || ||||| || || || ||||| | | || ||||| ||
Sbjct 716175 CAAAGTGCGGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGG 716234
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| |||||||| || || ||||| | || || | ||||| |||||||||| ||| ||
Sbjct 716235 GATGCCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGATTCAAC 716294
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| |||||||| ||||| || |||||||||||||| || ||||||||
Sbjct 716295 CTCCAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACAAAGATCTGCAT 716342
Score = 132 bits (146), Expect = 1e-25
Identities = 154/205 (75%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || || || || ||||| | || || || || ||||| || ||||
Sbjct 716627 ACCGCCACGAAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAGA 716686
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||| || ||||| || || || || || |||||||| ||||||||||| ||
Sbjct 716687 AAGGGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGTGG 716746
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|| |||||||||||||| ||| ||||| || ||| ||||||| || ||||| | || |
Sbjct 716747 GATTCCCTCCTTGTCTTGAATC-TTGCTCTTGACGTTATCGATGGTATCCGAGGACTCAA 716805
Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075
| || |||||||| ||||| || ||
Sbjct 716806 CCTCAAGAGTGATGGTCTTTCCGGT 716830
Score = 87.8 bits (96), Expect = 4e-12
Identities = 137/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 230205 GACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAA 230264
|| ||| ||||||| || | |||||||| | |||| ||| |||||| |||||
Sbjct 1224337 GAGGCTCTTCCTTGTGCACTCCTTGGCATGAACTCGAATCTGATGAAGCAATACATCGAG 1224278
Query 230265 TTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAAC 230324
||||| ||||||||| | | | || || || | ||||| || || || || |||
Sbjct 1224277 TTCGTCGCTGATCGTCTGCTTCTTGCCCTCGGCAATGAGAAGGTCTACAAGTCTGCCAAC 1224218
Query 230325 CCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGT 230384
|| || | ||||||||| ||| || ||| || || ||||||||||| || |||||
Sbjct 1224217 CCATTTGACTTTATGGAGAACATCTCGCTCGCTGGCAAGACTAACTTCTTTGAGAAGCGC 1224158
Query 230385 GTCAGCGATTATCAAA 230400
|| | || || ||||
Sbjct 1224157 GTTGGTGACTACCAAA 1224142
>seq26
Length=969302
Score = 152 bits (168), Expect = 1e-31
Identities = 141/179 (79%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
||||||||||| || || | || || |||||||| || ||||| || ||||||||||||
Sbjct 292270 TTTTGGATGTTATAATCGGAGAGGGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATC 292211
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
||||| |||||||| ||||| ||||||||||| |||||||| | || || | |||
Sbjct 292210 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 292151
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
||||| || || | ||||| || |||||||| ||||| ||||| | ||||| |||||
Sbjct 292150 ATAGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 292092
>seq16
Length=1327714
Score = 150 bits (166), Expect = 4e-31
Identities = 164/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || || || || ||||| | || || || ||||||||||| || |
Sbjct 332080 CCACCACGGAGACGCAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAG 332139
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| ||||| || || || ||||||| ||||||||||| |||
Sbjct 332140 AGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGA 332199
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || |||||||||||||| || | || || | ||||| || || |||| || ||
Sbjct 332200 ATTCCTTCCTTGTCTTGGATTTTGGACTTGACATTGTCGATGGTATCGGAAGACTCCACC 332259
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
||||| ||||| ||||| ||||| | ||||| |||||
Sbjct 332260 TCGAGTGTGATAGTCTTGCCCGTGAGGGTCTTGACGAA 332297
>seq37
Length=479966
Score = 138 bits (152), Expect = 2e-27
Identities = 145/191 (76%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| ||||| ||||||||||| | || ||||||| ||| || ||||| || | |||||
Sbjct 404105 TCCTTTTGAATGTTGTAGTCGGATAGGGTGCGGCTATCTTCAAGTTGCTTACTAGCAAAA 404164
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|| | | || ||||| || ||||||||||| || || ||||| | || ||| |
Sbjct 404165 ATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGAATCTTGGACTTGACGTTG 404224
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
|||||||||||||||| ||| || || | |||||| ||||| || ||||| ||||||||
Sbjct 404225 TCGATAGTGTCCGAAGATTCAACCTCCAAAGTGATAGTCTTTCCAGTCAAGGTCTTAACA 404284
Query 283089 AATATCTGCAT 283099
|| || |||||
Sbjct 404285 AAGATTTGCAT 404295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046738247794434
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |