Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq4 123 2e-23
seq26 111 1e-19
seq16 104 2e-17
seq37 89.7 4e-13
>seq4
Length=1888314
Score = 123 bits (136), Expect = 2e-23
Identities = 145/194 (75%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
||||||||||||||||||||| ||| ||| | || |||| ||||| || |||||
Sbjct 715923 CTCCTTTTGGATGTTGTAATCACTCAGTGTACGCCCATCCTCCAATTGCTTACCAGCAAA 715982
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAAT 44263
|||||| |||||||| || | || | ||| ||||| || |||||| ||| || |
Sbjct 715983 GATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTGGATCTTCGACTTGACATT 716042
Query 44264 GTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323
|| | |||||||| | || ||||| |||| ||||| |||||||| || | |||||
Sbjct 716043 GT--CAATGGTGTCCGAAGACTCCACTTCCAATGTAATGGTCTTTCCGGTCAAAGTCTTG 716100
Query 44324 ACGAAGATTTGCAT 44337
|| |||||||||||
Sbjct 716101 ACAAAGATTTGCAT 716114
Score = 96.9 bits (106), Expect = 2e-15
Identities = 149/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| ||||| || ||||||||| ||||||||||| | | ||| |||| ||
Sbjct 716134 ACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCTGACAAAGTGCGGCCGTCTTCA 716193
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| || || ||||| | | |||||| || | || | || ||||| |||
Sbjct 716194 AGTTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGGATGCCCTCCTTATCCTGA 716253
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | |||||||| | ||||| ||||||| || || ||||
Sbjct 716254 ATCTTGGACTTGACATTGT--CGATGGTGTCCGAAGATTCAACCTCCAGAGTGATAGTCT 716311
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| || | ||||| || ||||| |||||
Sbjct 716312 TTCCAGTCAAAGTCTTAACAAAGATCTGCAT 716342
>seq26
Length=969302
Score = 111 bits (122), Expect = 1e-19
Identities = 136/184 (74%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
||||||||||||| ||||||| ||| || | || || || ||||| ||||||||||
Sbjct 292272 CCTTTTGGATGTTATAATCGGAGAGGGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGA 292213
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
|||||||||| || || | || | || ||||| ||| ||||| ||| || |||
Sbjct 292212 TCAAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 292153
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || || |||| ||| || ||||| | || || ||||| ||||| |||||||| ||
Sbjct 292152 --CGATAGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGAC 292095
Query 44326 GAAG 44329
||||
Sbjct 292094 GAAG 292091
>seq16
Length=1327714
Score = 104 bits (114), Expect = 2e-17
Identities = 146/203 (72%), Gaps = 4/203 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| || ||||| || |||||| |||||||||||||||| ||| ||| | || ||
Sbjct 332098 ACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCG 332157
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| || || ||||||| || || || || | || | |||||||| ||
Sbjct 332158 AGTTGCTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGTGGAATTCCTTCCTTGTCTTGG 332217
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|| || ||| || ||| | ||||| |||| || |||||||| | || || ||||
Sbjct 332218 ATTTTGGACTTGACATTGT--CGATGGTATCGGAAGACTCCACCTCGAGTGTGATAGTCT 332275
Query 44307 TTCCCGTGAGGGTCTTCACGAAG 44329
| |||||||||||||| ||||||
Sbjct 332276 TGCCCGTGAGGGTCTTGACGAAG 332298
>seq37
Length=479966
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
||||||||| |||||||| |||| || ||| || || || ||||| | |||||
Sbjct 404104 CTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGGCTATCTTCAAGTTGCTTACTAGCAAA 404163
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
|| | | |||||| || | || | ||| ||||| ||| ||||| ||| | |
Sbjct 404164 AATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGAATCTTGGACTTGACGTT 404223
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||| | ||||| ||||||| || || |||||||| || | |||||| ||
Sbjct 404224 GTCGATAGTGTCCGAAGATTCAACCTCCAAAGTGATAGTCTTTCCAGTCAAGGTCTTAAC 404283
Query 44326 GAAGATTTGCAT 44337
|||||||||||
Sbjct 404284 AAAGATTTGCAT 404295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990088495807
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |