Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016- 01-07] 71 sequences; 48,876,257 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq16 140 8e-28 seq4 132 1e-25 seq26 125 2e-23 seq37 105 2e-17 >seq16 Length=1327714 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || ||||| || || || ||||| ||||||||||| || || |||||| Sbjct 332297 TTCGTCAAGACCCTCACGGGCAAGACTATCACACTCGAGGTGGAGTCTTCCGATACCATC 332238 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| || || || ||||| |||||||| || || ||||| ||||| || Sbjct 332237 GACAATGTCAAGTCCAAAATCCAAGACAAGGAAGGAATTCCACCCGACCAACAACGCCTG 332178 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109 |||||||| || || || ||||| ||||| | ||||| ||||||| ||| |||| || Sbjct 332177 ATCTTCGCTGGCAAGCAACTCGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAG 332118 Query 178110 GAATCAACACTGCATCTTGT 178129 || || || || ||||| || Sbjct 332117 GAGTCGACTCTTCATCTCGT 332098 >seq4 Length=1888314 Score = 132 bits (146), Expect = 1e-25 Identities = 149/198 (75%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || || || || || || ||||| || ||||| ||| || || ||||||| Sbjct 716560 TCGTCAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCG 716501 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | ||||| || |||||||||||||| ||||| || || || ||||| ||||| || | Sbjct 716500 ACAACGTGAAGTCGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAACAACGTCTCA 716441 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||||||||| || || || || ||||| | ||||| |||| |||||| |||| || | Sbjct 716440 TCTTCGCCGGCAAGCAACTTGAGGATGGCCGAACTCTCTCCGACTATAACATCCAGAAGG 716381 Query 178111 AATCAACACTGCATCTTG 178128 | || || || || |||| Sbjct 716380 AGTCCACCCTTCA-CTTG 716364 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || ||||| || ||||| || ||||| ||| || ||| Sbjct 716339 CAGATCTTTGTTAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTTGAATCTTCGGAC 716280 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||||||||| || || || ||||| || |||||||| Sbjct 716279 ACCATCGACAATGTCAAGTCCAAGATTCAGGATAAGGAGGGCATCCCACCCGACCAGCAG 716220 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||| || || || || ||||| || | ||| | | ||||| ||| | Sbjct 716219 AGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCCGCACTTTGTCAGATTACAACATT 716160 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || || || ||| | ||| Sbjct 716159 CAAAAGGAGTCGACTCTTCATTTGGTT 716133 >seq26 Length=969302 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || || || || || || ||||| || ||||| || ||| || || ||| Sbjct 292092 TTCGTCAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGATACTATC 292151 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| |||||||| || ||||| || |||||||| || || | Sbjct 292152 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTTG 292211 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||| |||||||| || || |||||||| | || || ||||||||||| ||||||| Sbjct 292212 ATCTTTGCCGGAAAGCAACTTGAAGATGGCCGTACCCTCTCCGATTATAACATCCAAAA 292270 >seq37 Length=479966 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || ||||| || ||||| | ||||| ||| || ||| Sbjct 404292 CAAATCTTTGTTAAGACCTTGACTGGAAAGACTATCACTTTGGAGGTTGAATCTTCGGAC 404233 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||||||||| || || || ||||| || |||||||| Sbjct 404232 ACTATCGACAACGTCAAGTCCAAGATTCAGGATAAGGAGGGTATCCCACCCGACCAGCAG 404173 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || || | || || || |||||| | | || || |||| || ||| | Sbjct 404172 AGACTTATTTTTGCTAGTAAGCAACTTGAAGATAGCCGCACCCTATCCGACTACAACATT 404113 Query 178104 CAAAAAGAATC 178114 ||||| || || Sbjct 404112 CAAAAGGAGTC 404102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730104980774