Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20scopiformis_20[genbank_20GCA_5F001500285.1_202016-
01-07] 71 sequences; 48,876,257 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq16 140 8e-28
seq4 132 1e-25
seq26 125 2e-23
seq37 105 2e-17
>seq16
Length=1327714
Score = 140 bits (154), Expect = 8e-28
Identities = 151/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
||||| || || ||||| || || || ||||| ||||||||||| || || ||||||
Sbjct 332297 TTCGTCAAGACCCTCACGGGCAAGACTATCACACTCGAGGTGGAGTCTTCCGATACCATC 332238
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| || ||||| || || || ||||| |||||||| || || ||||| ||||| ||
Sbjct 332237 GACAATGTCAAGTCCAAAATCCAAGACAAGGAAGGAATTCCACCCGACCAACAACGCCTG 332178
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109
|||||||| || || || ||||| ||||| | ||||| ||||||| ||| |||| ||
Sbjct 332177 ATCTTCGCTGGCAAGCAACTCGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAG 332118
Query 178110 GAATCAACACTGCATCTTGT 178129
|| || || || ||||| ||
Sbjct 332117 GAGTCGACTCTTCATCTCGT 332098
>seq4
Length=1888314
Score = 132 bits (146), Expect = 1e-25
Identities = 149/198 (75%), Gaps = 1/198 (1%)
Strand=Plus/Minus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || || || || || || ||||| || ||||| ||| || || |||||||
Sbjct 716560 TCGTCAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAATCTTCCGATACCATCG 716501
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| ||||| || |||||||||||||| ||||| || || || ||||| ||||| || |
Sbjct 716500 ACAACGTGAAGTCGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAACAACGTCTCA 716441
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
|||||||||| || || || || ||||| | ||||| |||| |||||| |||| || |
Sbjct 716440 TCTTCGCCGGCAAGCAACTTGAGGATGGCCGAACTCTCTCCGACTATAACATCCAGAAGG 716381
Query 178111 AATCAACACTGCATCTTG 178128
| || || || || ||||
Sbjct 716380 AGTCCACCCTTCA-CTTG 716364
Score = 131 bits (144), Expect = 4e-25
Identities = 153/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||| | || ||||| || ||||| || ||||| ||| || |||
Sbjct 716339 CAGATCTTTGTTAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTTGAATCTTCGGAC 716280
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||||||||| || || || ||||| || ||||||||
Sbjct 716279 ACCATCGACAATGTCAAGTCCAAGATTCAGGATAAGGAGGGCATCCCACCCGACCAGCAG 716220
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||||||||||| || || || || ||||| || | ||| | | ||||| ||| |
Sbjct 716219 AGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCCGCACTTTGTCAGATTACAACATT 716160
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
||||| || || || || ||| | |||
Sbjct 716159 CAAAAGGAGTCGACTCTTCATTTGGTT 716133
>seq26
Length=969302
Score = 125 bits (138), Expect = 2e-23
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
||||| || || || || || || || ||||| || ||||| || ||| || || |||
Sbjct 292092 TTCGTCAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGATACTATC 292151
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| || ||||| ||||| |||||||| || ||||| || |||||||| || || |
Sbjct 292152 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTTG 292211
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||| |||||||| || || |||||||| | || || ||||||||||| |||||||
Sbjct 292212 ATCTTTGCCGGAAAGCAACTTGAAGATGGCCGTACCCTCTCCGATTATAACATCCAAAA 292270
>seq37
Length=479966
Score = 105 bits (116), Expect = 2e-17
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || || || | || ||||| || ||||| | ||||| ||| || |||
Sbjct 404292 CAAATCTTTGTTAAGACCTTGACTGGAAAGACTATCACTTTGGAGGTTGAATCTTCGGAC 404233
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| |||||||| ||||||||||| || || || ||||| || ||||||||
Sbjct 404232 ACTATCGACAACGTCAAGTCCAAGATTCAGGATAAGGAGGGTATCCCACCCGACCAGCAG 404173
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||||| || || | || || || |||||| | | || || |||| || ||| |
Sbjct 404172 AGACTTATTTTTGCTAGTAAGCAACTTGAAGATAGCCGCACCCTATCCGACTACAACATT 404113
Query 178104 CAAAAAGAATC 178114
||||| || ||
Sbjct 404112 CAAAAGGAGTC 404102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730104980774
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |