Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq124 129 7e-25 seq93 87.8 2e-12 >seq124 Length=198120 Score = 129 bits (142), Expect = 7e-25 Identities = 461/716 (64%), Gaps = 6/716 (1%) Strand=Plus/Plus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 || ||||| || || | |||| |||| || || || || | || |||||||| | | Sbjct 126195 TCGAACTCATCACCATAGACATCAGCCAAGCCTGGGCACTCGTTGGGGCACATCAAAGTC 126254 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 54070 |||||||| | | || || || ||||| ||||||||||| ||||| | || || Sbjct 126255 CACTCTCCATTCTTCTCAACACGCTTCATGAAGAGATCAGGGATCCACAAGGCGTAGAAG 126314 Query 54071 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 54130 ||||| | | || |||||| || || |||||| ||||| ||| || | | Sbjct 126315 AGATCACGAGCTCGGACTTCCTCTTTGCCGTGGTTCTTTCGGAGATCAAGGTACTCGAAG 126374 Query 54131 ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCC 54190 | ||| | ||||| || || | ||| |||| | | | || || | ||||| || || Sbjct 126375 ACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGTCTCTTGTTGCCACCT 126434 Query 54191 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 54250 || || | |||||| || ||||| || | || | | ||| |||| ||||| ||||| Sbjct 126435 TGGTCGACGTATCTGGCAGTGTTGTTGAAGACACGTAGCATGGGAACGATACCGTTGGAG 126494 Query 54251 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGAC 54308 || || || || | || ||| || | |||||||| | |||| |||| Sbjct 126495 TTTCCGTTCGTTCCCGCAATGTAGGCACCGGTAGCACGAATTCGGTGAACATTG--AGAC 126552 Query 54309 CTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 54368 | || || || || | || ||||| | ||||| || || ||||| ||||| || | Sbjct 126553 CGATTCCACCAGCATTCTTGGAGATCATGGCGCAAGTCTTCAATGTATCGTAGATACCGT 126612 Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 54428 | || ||||| || |||||| | || || || ||| | ||| | || | Sbjct 126613 CAATGCTATCCTCTTTCATGTCGATAAGGAAGCATGAAGAGAGTTGTGCTTGTGGTGTAC 126672 Query 54429 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 54488 | || ||||| || || ||||| || || || || || | || | | ||||| | Sbjct 126673 CGGCGGCGAATAAAGTTGGGGAAGCATGGGTGAAGCACTTCTGGGACATCAAGTTGTATG 126732 Query 54489 TCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATG 54547 ||||||| || | || ||||| || | ||||| || || || || ||||| | ||| Sbjct 126733 TCTCGATGGCAGCCTCAATATCTTCACCG-TGAATACCAACAGCCACTCGCATAATCATA 126791 Query 54548 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTT 54607 || || || | || |||||| || | || | ||| ||| || | ||| Sbjct 126792 TGTTGTGGGCGCTCGCAGATCTTTCCGTCCAGGCGGAGGAGGTATGATCGCTCGAGAGTC 126851 Query 54608 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 || || || || || | ||| ||||| || || || | |||| | |||||||| Sbjct 126852 TTGAAGCCGAAGTATTGGTAGTTGAAGTCCCGGTCATAGACAATAGCGGAGTTGAG 126907 >seq93 Length=1762202 Score = 87.8 bits (96), Expect = 2e-12 Identities = 226/339 (67%), Gaps = 13/339 (4%) Strand=Plus/Minus Query 24355 TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTA---CTA-TCTTTAACATATGTA 24410 ||||||| || ||||| |||||||| | | | || || || || | ||||| Sbjct 1531842 TTGTCTCGATGGCATTGAAGAGATA----TGTGCGTTGGGCCTGCTCCTTGATGTATGTG 1531787 Query 24411 TCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG 24470 || || | ||| ||| | || ||||||||||| || || || || || |||||| Sbjct 1531786 TCGATGAGGAGAGAGTACGTCTCGGAATGAATGTTCTCCATCATGATCTGGAAGCCGTAG 1531727 Query 24471 AAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTC 24530 || || | |||||||| ||||| ||||| || ||| || || | | || || || Sbjct 1531726 AAGCAGCGAGCCTCGGGGATCTGAACTTCACCACTAAAGCGCTCGACAAGGTTCTCGTTG 1531667 Query 24531 ACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA---TTTTTCG 24587 || ||||| || || || || || || | || ||| || || || | ||| Sbjct 1531666 ACGATTCCATCTGAAGCGGCGAAGAATGCAAGAACGTGTGAGATGAAGTAACGCTCATCG 1531607 Query 24588 TC-TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGT 24646 || | | | | | || ||||| || | || ||| || || | ||| | ||||| | || Sbjct 1531606 TCATTGAGCTTG-TTGTTCCAGTCGTGGAGATCCTTCGACAGATCAATCTCTTCTGCGGT 1531548 Query 24647 CCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 ||| || |||||||| ||||| || ||||| | |||||| Sbjct 1531547 CCAGAAAGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 1531509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720078588400