Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12-
03] 205 sequences; 69,693,031 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq124 129 7e-25
seq93 87.8 2e-12
>seq124
Length=198120
Score = 129 bits (142), Expect = 7e-25
Identities = 461/716 (64%), Gaps = 6/716 (1%)
Strand=Plus/Plus
Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010
|| ||||| || || | |||| |||| || || || || | || |||||||| | |
Sbjct 126195 TCGAACTCATCACCATAGACATCAGCCAAGCCTGGGCACTCGTTGGGGCACATCAAAGTC 126254
Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 54070
|||||||| | | || || || ||||| ||||||||||| ||||| | || ||
Sbjct 126255 CACTCTCCATTCTTCTCAACACGCTTCATGAAGAGATCAGGGATCCACAAGGCGTAGAAG 126314
Query 54071 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 54130
||||| | | || |||||| || || |||||| ||||| ||| || | |
Sbjct 126315 AGATCACGAGCTCGGACTTCCTCTTTGCCGTGGTTCTTTCGGAGATCAAGGTACTCGAAG 126374
Query 54131 ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCC 54190
| ||| | ||||| || || | ||| |||| | | | || || | ||||| || ||
Sbjct 126375 ACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGTCTCTTGTTGCCACCT 126434
Query 54191 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 54250
|| || | |||||| || ||||| || | || | | ||| |||| ||||| |||||
Sbjct 126435 TGGTCGACGTATCTGGCAGTGTTGTTGAAGACACGTAGCATGGGAACGATACCGTTGGAG 126494
Query 54251 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGAC 54308
|| || || || | || ||| || | |||||||| | |||| ||||
Sbjct 126495 TTTCCGTTCGTTCCCGCAATGTAGGCACCGGTAGCACGAATTCGGTGAACATTG--AGAC 126552
Query 54309 CTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 54368
| || || || || | || ||||| | ||||| || || ||||| ||||| || |
Sbjct 126553 CGATTCCACCAGCATTCTTGGAGATCATGGCGCAAGTCTTCAATGTATCGTAGATACCGT 126612
Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 54428
| || ||||| || |||||| | || || || ||| | ||| | || |
Sbjct 126613 CAATGCTATCCTCTTTCATGTCGATAAGGAAGCATGAAGAGAGTTGTGCTTGTGGTGTAC 126672
Query 54429 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 54488
| || ||||| || || ||||| || || || || || | || | | ||||| |
Sbjct 126673 CGGCGGCGAATAAAGTTGGGGAAGCATGGGTGAAGCACTTCTGGGACATCAAGTTGTATG 126732
Query 54489 TCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATG 54547
||||||| || | || ||||| || | ||||| || || || || ||||| | |||
Sbjct 126733 TCTCGATGGCAGCCTCAATATCTTCACCG-TGAATACCAACAGCCACTCGCATAATCATA 126791
Query 54548 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTT 54607
|| || || | || |||||| || | || | ||| ||| || | |||
Sbjct 126792 TGTTGTGGGCGCTCGCAGATCTTTCCGTCCAGGCGGAGGAGGTATGATCGCTCGAGAGTC 126851
Query 54608 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663
|| || || || || | ||| ||||| || || || | |||| | ||||||||
Sbjct 126852 TTGAAGCCGAAGTATTGGTAGTTGAAGTCCCGGTCATAGACAATAGCGGAGTTGAG 126907
>seq93
Length=1762202
Score = 87.8 bits (96), Expect = 2e-12
Identities = 226/339 (67%), Gaps = 13/339 (4%)
Strand=Plus/Minus
Query 24355 TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTA---CTA-TCTTTAACATATGTA 24410
||||||| || ||||| |||||||| | | | || || || || | |||||
Sbjct 1531842 TTGTCTCGATGGCATTGAAGAGATA----TGTGCGTTGGGCCTGCTCCTTGATGTATGTG 1531787
Query 24411 TCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG 24470
|| || | ||| ||| | || ||||||||||| || || || || || ||||||
Sbjct 1531786 TCGATGAGGAGAGAGTACGTCTCGGAATGAATGTTCTCCATCATGATCTGGAAGCCGTAG 1531727
Query 24471 AAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTC 24530
|| || | |||||||| ||||| ||||| || ||| || || | | || || ||
Sbjct 1531726 AAGCAGCGAGCCTCGGGGATCTGAACTTCACCACTAAAGCGCTCGACAAGGTTCTCGTTG 1531667
Query 24531 ACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA---TTTTTCG 24587
|| ||||| || || || || || || | || ||| || || || | |||
Sbjct 1531666 ACGATTCCATCTGAAGCGGCGAAGAATGCAAGAACGTGTGAGATGAAGTAACGCTCATCG 1531607
Query 24588 TC-TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGT 24646
|| | | | | | || ||||| || | || ||| || || | ||| | ||||| | ||
Sbjct 1531606 TCATTGAGCTTG-TTGTTCCAGTCGTGGAGATCCTTCGACAGATCAATCTCTTCTGCGGT 1531548
Query 24647 CCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685
||| || |||||||| ||||| || ||||| | ||||||
Sbjct 1531547 CCAGAAAGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 1531509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593720078588400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |