Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq93 165 8e-36 seq99 100 3e-16 seq62 96.9 4e-15 >seq93 Length=1762202 Score = 165 bits (182), Expect = 8e-36 Identities = 210/286 (73%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| || ||| | || ||| Sbjct 1531509 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTCTGGACCGCAGAAGAGATTGATCTG 1531568 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAA 116751 || ||||| | | | ||||||| | | | || ||| | ||||| | |||||| Sbjct 1531569 TCGAAGGATCTCCA-CGACTGGAACAACAAGCTCAATGACGATGAGCGTTACTTCATCTC 1531627 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||||| || || || |||||||| || || |||||||||||||| || |||||||| Sbjct 1531628 ACACGTTCTTGCATTCTTCGCCGCTTCAGATGGAATCGTCAACGAGAACCTTGTCGAGCG 1531687 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 || | || || ||| | ||||||| || |||||||||||||| |||||| || Sbjct 1531688 CTTTAGTGGTGAAGTTCAGATCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGAT 1531747 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | || || || | ||| || |||||||||||| ||| Sbjct 1531748 GGAGAACATTCATTCCGAGACGTACTCTCTCCTCATCGACACATAC 1531793 Score = 123 bits (136), Expect = 3e-23 Identities = 312/468 (67%), Gaps = 5/468 (1%) Strand=Plus/Plus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-C 117027 || ||| |||| |||||||||| ||||| | | |||||| | || |||| | | Sbjct 1531894 CCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATCCAAGACA-AGAGCTCTAC 1531952 Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||| | | || || || || ||||| || |||||||| ||||||| || || Sbjct 1531953 CTTTGCTCAACGTCTCGTCGCATTCGCCGCTGTCGAGGGTATCTTCTTCAGTGGATCGTT 1532012 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147 ||| | || || ||| | ||||| || || |||||| | || ||||||||| ||||| Sbjct 1532013 CGCATCTATCTTCTGGTTAAAGAAGCGTGGTCTCATGGCTGGTCTGACTTTCTCTAACGA 1532072 Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTT 117207 || ||||| | ||||||||||| || ||||||||| || | || ||| ||||| Sbjct 1532073 ACTTATCTCTCGTGACGAGGGTCTTCACACCGACTTTGCTTGCCTTCTCTTCTCTCATTT 1532132 Query 117208 GGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGA 117267 | ||| || || ||| | |||| || || | ||||| || || | || || Sbjct 1532133 GAAGCACCGCCCAAGCAAGCAAGCCGTCCAAGACGTCATTACCGAGGCTGTTGAGATTGA 1532192 Query 117268 GCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGA 117326 |||| ||| | ||||| || || || |||| || || || | || | | | | Sbjct 1532193 GCAGGAGTTCTTGACCGAGGCTCTTCC-TTGCGCACTCCTCGGCATGAACTCCAACCTCA 1532251 Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGC 117386 || |||||||||||||||||| || || | || || | | || | | || ||| Sbjct 1532252 TGAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTTGTTGCTCTTGGCAACGAGAAGG 1532311 Query 117387 ACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC-CTTG 117433 |||||| | ||||||| | ||||| ||| | |||||| |||| Sbjct 1532312 TCTACAAGTCAGCCAACCCATTCGACTTCATGGAGAACATCTCACTTG 1532359 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA- 40760 || || || || || || || ||||||||| | || || ||| || |||||| | | | Sbjct 805895 GTCAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTAGAATCCTCCGACACCATCGAC 805954 Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| | ||| || || | ||||| || |||||||| | ||||| ||||| || || Sbjct 805955 AACGTT-AAGTCGAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAACAACGCCTGAT 806013 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || ||| ||||| || || || || | || |||||| ||||||||| ||||||||||| Sbjct 806014 CTTCGCTGGCAAGCAACTCGAAGATGGACGAACCCTCTCCGACTACAATATCCAGAAGGA 806073 Query 40881 GGCCACGCTGCATCTAGT 40898 | |||| || ||||| || Sbjct 806074 GTCCACCCTCCATCTCGT 806091 >seq99 Length=1752785 Score = 100 bits (110), Expect = 3e-16 Identities = 133/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT- 40757 ||||| || || ||||||||||| || |||||| |||| || || | | ||||| | Sbjct 456448 TTCGTTAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGAGCGACACTATC 456507 Query 40758 GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| || || ||||| | ||||| ||||| || Sbjct 456508 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAAGGAATCCCACCCGACCAACAACGCCT 456566 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| ||||| || || || || | || ||||| | ||| ||||||||||| || Sbjct 456567 GATCTTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGAGCGATTACAACATCCAAAA 456626 Query 40878 GG 40879 || Sbjct 456627 GG 456628 >seq62 Length=1271336 Score = 96.9 bits (106), Expect = 4e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| |||||||| | || ||||| ||| ||| | | Sbjct 898461 TTCGTCAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCGAGTCCAGCGATACGATC 898402 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| ||||| ||||| |||||||||| ||| | Sbjct 898401 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCGGACCAGCAGCGATT 898343 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| || || || || || || || | |||||||| ||||||||||| ||||| Sbjct 898342 GATCTTTGCTGGAAAGCAACTTGAGGATGGCCGCACCCTTTCGGACTACAACATTCAGAA 898283 Query 40878 GG 40879 || Sbjct 898282 GG 898281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217879750800