Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12-
03] 205 sequences; 69,693,031 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq93 165 8e-36
seq99 100 3e-16
seq62 96.9 4e-15
>seq93
Length=1762202
Score = 165 bits (182), Expect = 8e-36
Identities = 210/286 (73%), Gaps = 5/286 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||||| || ||| | || |||
Sbjct 1531509 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTCTGGACCGCAGAAGAGATTGATCTG 1531568
Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAA 116751
|| ||||| | | | ||||||| | | | || ||| | ||||| | ||||||
Sbjct 1531569 TCGAAGGATCTCCA-CGACTGGAACAACAAGCTCAATGACGATGAGCGTTACTTCATCTC 1531627
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||||| || || || |||||||| || || |||||||||||||| || ||||||||
Sbjct 1531628 ACACGTTCTTGCATTCTTCGCCGCTTCAGATGGAATCGTCAACGAGAACCTTGTCGAGCG 1531687
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
|| | || || ||| | ||||||| || |||||||||||||| |||||| ||
Sbjct 1531688 CTTTAGTGGTGAAGTTCAGATCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGAT 1531747
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
||||||| | || || || | ||| || |||||||||||| |||
Sbjct 1531748 GGAGAACATTCATTCCGAGACGTACTCTCTCCTCATCGACACATAC 1531793
Score = 123 bits (136), Expect = 3e-23
Identities = 312/468 (67%), Gaps = 5/468 (1%)
Strand=Plus/Plus
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-C 117027
|| ||| |||| |||||||||| ||||| | | |||||| | || |||| | |
Sbjct 1531894 CCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATCCAAGACA-AGAGCTCTAC 1531952
Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087
||| | | || || || || ||||| || |||||||| ||||||| || ||
Sbjct 1531953 CTTTGCTCAACGTCTCGTCGCATTCGCCGCTGTCGAGGGTATCTTCTTCAGTGGATCGTT 1532012
Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147
||| | || || ||| | ||||| || || |||||| | || ||||||||| |||||
Sbjct 1532013 CGCATCTATCTTCTGGTTAAAGAAGCGTGGTCTCATGGCTGGTCTGACTTTCTCTAACGA 1532072
Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTT 117207
|| ||||| | ||||||||||| || ||||||||| || | || ||| |||||
Sbjct 1532073 ACTTATCTCTCGTGACGAGGGTCTTCACACCGACTTTGCTTGCCTTCTCTTCTCTCATTT 1532132
Query 117208 GGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGA 117267
| ||| || || ||| | |||| || || | ||||| || || | || ||
Sbjct 1532133 GAAGCACCGCCCAAGCAAGCAAGCCGTCCAAGACGTCATTACCGAGGCTGTTGAGATTGA 1532192
Query 117268 GCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGA 117326
|||| ||| | ||||| || || || |||| || || || | || | | | |
Sbjct 1532193 GCAGGAGTTCTTGACCGAGGCTCTTCC-TTGCGCACTCCTCGGCATGAACTCCAACCTCA 1532251
Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGC 117386
|| |||||||||||||||||| || || | || || | | || | | || |||
Sbjct 1532252 TGAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCTTGTTGCTCTTGGCAACGAGAAGG 1532311
Query 117387 ACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC-CTTG 117433
|||||| | ||||||| | ||||| ||| | |||||| ||||
Sbjct 1532312 TCTACAAGTCAGCCAACCCATTCGACTTCATGGAGAACATCTCACTTG 1532359
Score = 116 bits (128), Expect = 4e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA- 40760
|| || || || || || || ||||||||| | || || ||| || |||||| | | |
Sbjct 805895 GTCAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTAGAATCCTCCGACACCATCGAC 805954
Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820
|||| | ||| || || | ||||| || |||||||| | ||||| ||||| || ||
Sbjct 805955 AACGTT-AAGTCGAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAACAACGCCTGAT 806013
Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880
|| ||| ||||| || || || || | || |||||| ||||||||| |||||||||||
Sbjct 806014 CTTCGCTGGCAAGCAACTCGAAGATGGACGAACCCTCTCCGACTACAATATCCAGAAGGA 806073
Query 40881 GGCCACGCTGCATCTAGT 40898
| |||| || ||||| ||
Sbjct 806074 GTCCACCCTCCATCTCGT 806091
>seq99
Length=1752785
Score = 100 bits (110), Expect = 3e-16
Identities = 133/182 (73%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT- 40757
||||| || || ||||||||||| || |||||| |||| || || | | ||||| |
Sbjct 456448 TTCGTTAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGAGCGACACTATC 456507
Query 40758 GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817
| |||| ||||| || || | ||||| || || ||||| | ||||| ||||| ||
Sbjct 456508 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAAGGAATCCCACCCGACCAACAACGCCT 456566
Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
|||| ||| ||||| || || || || | || ||||| | ||| ||||||||||| ||
Sbjct 456567 GATCTTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGAGCGATTACAACATCCAAAA 456626
Query 40878 GG 40879
||
Sbjct 456627 GG 456628
>seq62
Length=1271336
Score = 96.9 bits (106), Expect = 4e-15
Identities = 132/182 (73%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| |||||||| | || ||||| ||| ||| | |
Sbjct 898461 TTCGTCAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCGAGTCCAGCGATACGATC 898402
Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817
| |||| ||||| || || | ||||| ||||| ||||| |||||||||| ||| |
Sbjct 898401 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCGGACCAGCAGCGATT 898343
Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
|||| || || || || || || || | |||||||| ||||||||||| |||||
Sbjct 898342 GATCTTTGCTGGAAAGCAACTTGAGGATGGCCGCACCCTTTCGGACTACAACATTCAGAA 898283
Query 40878 GG 40879
||
Sbjct 898282 GG 898281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515217879750800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |