Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12-
03] 205 sequences; 69,693,031 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq93 104 4e-17
seq44 86.0 9e-12
>seq93
Length=1762202
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | ||||| | || || || || || ||| | ||| ||||| ||
Sbjct 806111 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACCATCACTCTTGAGGTTGAATCATCC 806170
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| ||||| || | || ||| ||||||||||| || ||||| ||||| |||||
Sbjct 806171 GACACAATCGACAACGTTAAGTCGAAGATTCAAGATAAGGAGGGTATCCCACCCGATCAG 806230
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | ||||| || || || || ||||| |||||| | |||| | ||| || |||
Sbjct 806231 CAACGTCTTATCTTCGCCGGTAAGCAATTGGAGGATGGCAGAACCCTGTCAGACTACAAT 806290
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||||| || || || || |||| ||||| | ||| | || ||||| ||
Sbjct 806291 ATTCAGAAGGAGTCCACCCTGCACTTGGTCCTCCGTCTTCGTGGTGGCAT 806340
>seq44
Length=1238088
Score = 86.0 bits (94), Expect = 9e-12
Identities = 209/307 (68%), Gaps = 20/307 (7%)
Strand=Plus/Minus
Query 228216 TAATATAATAAATGCTAGTTCtttaaa--aaatttaattaatttaaaagaatt-ggatat 228272
||||||||||||| || || ||| || || || |||||| || ||| |||| ||||
Sbjct 987 TAATATAATAAAT--TACTTTTTTTAATTAATTTAAATTAAATTCAAAAAATTCAAATAT 930
Query 228273 atctaacaattataatataaatatttCATCATTACCaaaaacattaattaaattaaatat 228332
|| | | || || |||| ||||| | || ||| | ||| | | ||| | || | |||
Sbjct 929 ATATTA-AAATAAAATAAAAATAATACAAAATTTCAAAAGATAATAAAAATGTTTATTAT 871
Query 228333 tagttcatgtaatataaaaaatactaattttataattaatttagataa----tttGAAAG 228388
|| | || ||||||| ||| || ||||| ||||||| ||| | |||| | ||
Sbjct 870 TAATAAATATAATATATAAATTA-TAATTATATAATTTATTAAAATAAAAAGTAATTAAT 812
Query 228389 AATTAGATATA--TCTAGAAATTTTAATATAAATATTTCATCATTACCAAAATCATTAAT 228446
||| | ||||| |||| ||| | | || |||||| ||| || ||||| |||||
Sbjct 811 AATAAAATATAATTCTATTAATAATTCTTTATATATTT--TCAATATAAAAATTATTAAA 754
Query 228447 CAAATTAAATATTAGGACATGTTATATAAAAAATACTAATTTTATAATTAAT-TTAGATA 228505
| |||| || || ||||||| || ||| |||||||||||| || |||
Sbjct 753 ACTAATAAAAATCTTGA----ATATATAATGAAATTTAAATTTATAATTAATAGTAAATA 698
Query 228506 ATTTGAA 228512
|||| ||
Sbjct 697 ATTTTAA 691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755454064144000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |