Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq93 104 4e-17 seq44 86.0 9e-12 >seq93 Length=1762202 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || || || || || ||| | ||| ||||| || Sbjct 806111 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACCATCACTCTTGAGGTTGAATCATCC 806170 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| || | || ||| ||||||||||| || ||||| ||||| ||||| Sbjct 806171 GACACAATCGACAACGTTAAGTCGAAGATTCAAGATAAGGAGGGTATCCCACCCGATCAG 806230 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||| || || || || ||||| |||||| | |||| | ||| || ||| Sbjct 806231 CAACGTCTTATCTTCGCCGGTAAGCAATTGGAGGATGGCAGAACCCTGTCAGACTACAAT 806290 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || |||| ||||| | ||| | || ||||| || Sbjct 806291 ATTCAGAAGGAGTCCACCCTGCACTTGGTCCTCCGTCTTCGTGGTGGCAT 806340 >seq44 Length=1238088 Score = 86.0 bits (94), Expect = 9e-12 Identities = 209/307 (68%), Gaps = 20/307 (7%) Strand=Plus/Minus Query 228216 TAATATAATAAATGCTAGTTCtttaaa--aaatttaattaatttaaaagaatt-ggatat 228272 ||||||||||||| || || ||| || || || |||||| || ||| |||| |||| Sbjct 987 TAATATAATAAAT--TACTTTTTTTAATTAATTTAAATTAAATTCAAAAAATTCAAATAT 930 Query 228273 atctaacaattataatataaatatttCATCATTACCaaaaacattaattaaattaaatat 228332 || | | || || |||| ||||| | || ||| | ||| | | ||| | || | ||| Sbjct 929 ATATTA-AAATAAAATAAAAATAATACAAAATTTCAAAAGATAATAAAAATGTTTATTAT 871 Query 228333 tagttcatgtaatataaaaaatactaattttataattaatttagataa----tttGAAAG 228388 || | || ||||||| ||| || ||||| ||||||| ||| | |||| | || Sbjct 870 TAATAAATATAATATATAAATTA-TAATTATATAATTTATTAAAATAAAAAGTAATTAAT 812 Query 228389 AATTAGATATA--TCTAGAAATTTTAATATAAATATTTCATCATTACCAAAATCATTAAT 228446 ||| | ||||| |||| ||| | | || |||||| ||| || ||||| ||||| Sbjct 811 AATAAAATATAATTCTATTAATAATTCTTTATATATTT--TCAATATAAAAATTATTAAA 754 Query 228447 CAAATTAAATATTAGGACATGTTATATAAAAAATACTAATTTTATAATTAAT-TTAGATA 228505 | |||| || || ||||||| || ||| |||||||||||| || ||| Sbjct 753 ACTAATAAAAATCTTGA----ATATATAATGAAATTTAAATTTATAATTAATAGTAAATA 698 Query 228506 ATTTGAA 228512 |||| || Sbjct 697 ATTTTAA 691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755454064144000