Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12-
03] 205 sequences; 69,693,031 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq99 102 9e-17
seq93 100 3e-16
seq62 93.3 5e-14
>seq99
Length=1752785
Score = 102 bits (112), Expect = 9e-17
Identities = 134/183 (73%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
||||||| || |||||||| ||| || || | || || || ||||| |||||||| |
Sbjct 456628 CCTTTTGGATGTTGTAATCGCTCAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGA 456569
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| || || || ||||||| || | | ||||||||| ||| || |||| ||| |
Sbjct 456568 TCAGGCGTTGTTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 456510
Query 43114 CC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172
| | ||||||||||| ||||| |||| ||||| || |||||||| || ||||| ||
Sbjct 456509 TCGATAGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTAACG 456450
Query 43173 AAG 43175
|||
Sbjct 456449 AAG 456447
>seq93
Length=1762202
Score = 100 bits (110), Expect = 3e-16
Identities = 164/234 (70%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010
||||| || || | | ||| | ||||||||| | || |||||||||||| |||||
Sbjct 806571 TATTGACCACCACGGAGACGGAGCACCAAATGGAGAGTTGACTCCTTTTGAATGTTGTAG 806512
Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070
|| || || || | || || | ||||||||||| || || | ||||||||||||
Sbjct 806511 TCGCTCAAGGTACGACCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCA 806452
Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGA 43129
| || | | |||||| ||| ||| | |||| |||| | | | ||||| |||
Sbjct 806451 GGTGGAATACCCTCCTTATCC-TGAATCTTTGACTTGACATTGTCAATGGTGTCTGACGA 806393
Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||| || | ||||| || ||||| || | ||||| |||||||| |||||
Sbjct 806392 CTCCACTTCCAATGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 806339
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
||||| |||| ||| |||||| ||||||||||| || | ||| || | | || ||
Sbjct 806319 ACCAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGACAGGGTTCTGCCATCCTCC 806260
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
| |||||||| ||||| || || || ||||| |||| || | | |||||| | | ||
Sbjct 806259 AATTGCTTACCGGCGAAGATAAGACGTTGCTGATCGGGTGGGATACCCTCCTTAT-CTTG 806201
Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
| | || | | | ||| | | | |||||| ||||| || || | |||||||| ||
Sbjct 806200 AATCTTCGACTTAACGTTGTCGATTGTGTCGGATGATTCAACCTCAAGAGTGATGGTCTT 806141
Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || | ||||| || ||||| |||||
Sbjct 806140 TCCGGTCAAGGTCTTGACGAAGATCTGCAT 806111
>seq62
Length=1271336
Score = 93.3 bits (102), Expect = 5e-14
Identities = 132/183 (72%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| ||||| ||||| || | || || || | || || || ||||| ||||| || |
Sbjct 898281 CCTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGA 898340
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| | |||||||||||| | || | | |||||||||| ||| || |||| ||| |
Sbjct 898341 TCAATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 898399
Query 43114 -CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172
| | ||| ||||| || || || || | |||||||| |||||||| || ||||| ||
Sbjct 898400 TCGATCGTATCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACG 898459
Query 43173 AAG 43175
|||
Sbjct 898460 AAG 898462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571816134717400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |