Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq124 297 2e-75 seq93 100 3e-16 seq99 89.7 5e-13 >seq124 Length=198120 Score = 297 bits (328), Expect = 2e-75 Identities = 561/818 (69%), Gaps = 8/818 (1%) Strand=Plus/Plus Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT 23124 |||||| ||||| || || || || ||| | || ||||| | || ||||||| Sbjct 125993 GTACTCCACAATCTCAGTGCAGAGGTTGGAGCTTCGAATTGTGCCGAGGTTCTTCTGGTT 126052 Query 23125 GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA 23184 ||| |||| |||||| | |||||||||||||||| | || | || |||||| ||| | Sbjct 126053 GCTCTTTCTATTGCAAGCATCCTTGTAGAGCATGAATGGATTCCCAGTCTCGGTCTGTGC 126112 Query 23185 CTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACC-TGCCTTCTT 23243 ||| | ||| | ||| | |||| || | | ||| || || ||||||| Sbjct 126113 CTCCAAGATGGAGTACCAAAGTTTCTGTGCCTTGA-TGGTCTTGCGACCCTTGCCTTCAC 126171 Query 23244 CCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGC 23302 ||||||||| | ||| | || || || || |||| || ||| || |||| ||| || Sbjct 126172 GCTCGTACTTCTCGTATAGAGCCTCGAACTCATCACCATAGACA-TCAGCCAAGCCTGGG 126230 Query 23303 GATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGA 23362 | | | || ||||| | | ||||| | | || ||||| || |||| || ||| Sbjct 126231 CACTCGTTGGGGCACATCAAAGTCCACTCTCCATTCTTCTCAACACGCTTCATGAAGAGA 126290 Query 23363 TCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTC 23422 || || ||||| | |||||||| || || || || || || |||||||||||| |||| Sbjct 126291 TCAGGGATCCACAAGGCGTAGAAGAGATCACGAGCTCGGACTTCCTCTTTGCCGTGGTTC 126350 Query 23423 TTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAAC 23482 ||| | ||| | | || || || || || ||||| ||||||||||| | ||| || Sbjct 126351 TTTCGGAGATCAAGGTACTCGAAGACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAAA 126410 Query 23483 GCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTT 23542 || || |||||||| ||||| || || |||||||| | ||| ||||||||| | || | | Sbjct 126411 GCACCTGGTCTCTTGTTGCCACCTTGGTCGACGTATCTGGCAGTGTTGTTGAAGACACGT 126470 Query 23543 AGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG--CCCGCCACACTCGAACCTTTTG 23600 ||||| || |||| ||||||||| ||| | || ||||| | | ||| | | Sbjct 126471 AGCATGGGAACGATACCGTTGGAGTTTCCG--TTCGTTCCCGCAATGTAGGCACCGGTAG 126528 Query 23601 CTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATT 23660 | |||| |||||| | || ||| || || || | || || ||||| ||||| Sbjct 126529 CACGAATTCGGTGAACATTGAGACCGATTCCACCAGCATTCTTGGAGATCATGGCGCAAG 126588 Query 23661 GTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACG 23720 |||| || |||||||| || || ||||| |||||||| | ||| | ||| || | Sbjct 126589 TCTTCAATGTATCGTAGATACCGTCAATGCTATCCTCTTTCATGTCGATAAGGAAGCATG 126648 Query 23721 AAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGT 23780 |||| | ||| |||| || ||| |||| | ||| | || ||| || || || ||| Sbjct 126649 AAGAGAGTTGTGCTTGTGGTGTACCGGCGGCGAATAAAGTTGGGGAAGCATGGGTGAAGC 126708 Query 23781 ATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATAC 23840 | | ||||| | ||||| || |||||||| || ||||| || || ||||| |||| Sbjct 126709 ACTTCTGGGACATCAAGTTGTATGTCTCGATGGCAGCCTCAATATCTTCACCGTGAATAC 126768 Query 23841 CGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCG 23878 | | || || ||||| ||||| | ||| || | |||| Sbjct 126769 CAACAGCCACTCGCATAATCATATGTTGTGGGCGCTCG 126806 >seq93 Length=1762202 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || |||||| |||| ||||| || ||||| | || || || |||| Sbjct 806338 CATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACATTGGAAGTGGAGTCGTC 806397 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | || | ||||| || ||| | ||| ||||| || | || || |||| Sbjct 806398 AGACACCATTGACAATGTCAAGTCAAAGATTCA-GGATAAGGAGGGTATTCCACCTGACC 806456 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||||| | || || ||||| || || ||||| || | || ||||||| || | Sbjct 806457 AGCAGCGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGTCGTACCTTGAGCGACTACA 806516 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||||| || || ||||| ||| |||| || Sbjct 806517 ACATTCAAAAGGAGTCAACTCTCCATTTGGTGCT 806550 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 || ||||| ||||| || || || |||||| | || || ||| | ||||||| |||| Sbjct 805895 GTCAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTAGAATCCTCCGACACCATCGAC 805954 Query 31265 ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATA 31324 | || || || || ||||||||||||| | || |||||||| || || || || Sbjct 805955 AACGTTAAGTCGAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAACAACGCCTGATC 806014 Query 31325 TTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||||| || | ||||| Sbjct 806015 TTCGCTGGCAAGCAACTCGAAGA 806037 >seq99 Length=1752785 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| || || ||||| || |||||| |||| || || || ||||| | || Sbjct 456448 TTCGTTAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGAGCGACACTATC 456507 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | ||||| | || |||||||||||| | || |||||||| || || || Sbjct 456508 GACAACGTCAAGTCCAAGATCCAGGACAAGGAAGGAATCCCACCCGACCAACAACGCCTG 456567 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || ||||||||||| || | || || || |||||||||| ||||| ||||| Sbjct 456568 ATCTTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGAGCGATTACAACATCCAAAA 456626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765257723600