Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq124 129 1e-24 seq93 102 2e-16 seq64 102 2e-16 >seq124 Length=198120 Score = 129 bits (142), Expect = 1e-24 Identities = 428/657 (65%), Gaps = 18/657 (3%) Strand=Plus/Plus Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451 ||| ||||||||| ||| || |||||||| | |||| ||||| || |||| ||| || Sbjct 126158 ACCCTTGCCTTCACGCTCGTACTTCTCGTATAGAGCCTCGAACTCATCACCATAGACATC 126217 Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC---AC 94508 | | ||| |||||||||| ||||||||||| | ||| | || ||| |||| || Sbjct 126218 AGCCAAGCCTGGGCACTCGTTGGGGCACATCAAAGTCCACT-CT--CCATTCTTCTCAAC 126274 Query 94509 TCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATC 94568 | || |||||||||||||| | ||| | || ||| ||||| | | | | || Sbjct 126275 ACGCTTCATGAAGAGATCAGGGATCCACAAGGCGTAGAAGAGATCACGAGCTCGGACTTC 126334 Query 94569 TTCATTACCGGCATTCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATCAGA 94628 || || ||| ||||||| | |||| | || || || ||||| Sbjct 126335 CTCTTTGCCGTGGTTCTTTCGGAGATCAAGGTACTCGAAGACATCTGCGTGCCATGGCTC 126394 Query 94629 AATATAGATGGCTGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGA 94688 | |||||||| ||| ||| ||||||| || || ||| || | | | ||| Sbjct 126395 GAGGTAGATGGCGAAAGCACCTGGTCTCTTGTTGCCACCTTGGTCGACGTATCTGGCAGT 126454 Query 94689 GACGTTAAAGATTTGGAGGAACGCCATGAGACCAGGGTGGGTACCACTCCATGACGAAAT 94748 | ||| |||| | || | | | || ||| | | | || || | || ||| Sbjct 126455 GTTGTTGAAGACACGTAGCATGGGAACGATACCGTTGGAGTTTCCGTTCGTTCCCGCAAT 126514 Query 94749 GGGGCTTCCTTTTGCCCTCAAATCA-TGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGG 94807 | | || | || | || || |||| | || |||| ||| |||||| |||||| Sbjct 126515 GTAGGCACCGGTAGCACG-AATTCGGTGAACATTGAGACCGATTCCACCAGCATTCTTGG 126573 Query 94808 AGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGC 94867 |||| || || ||| | ||||| || ||||| ||||||||||| |||| | | Sbjct 126574 AGATCATGGCGCAAGTCTTCAATGTATCGTAGATACCGTCAATGCTATCCTCTTTCATGT 126633 Query 94868 CCAGAAGGAAGCACGAGGAAAGTTG-GGGTGTGACTGTTCC----ACAATTAAACAGTGT 94922 | | ||||||||| || || ||||| | |||| ||| || | | |||| || Sbjct 126634 CGATAAGGAAGCATGAAGAGAGTTGTGCTTGTG-GTGTACCGGCGGCGAATAAA----GT 126688 Query 94923 GGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTT 94982 |||||||||||||| || | | | ||||| | | ||||| || ||| ||| | Sbjct 126689 TGGGGAAGCATGGGTGAAGCACTTCTGGGACATCAAGTTGTATGTCTCGATGGCAGCCTC 126748 Query 94983 GATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTC 95039 || ||| |||||||| || |||||||| ||||||||||| | || |||||||| Sbjct 126749 AATATCTTCACCGTGAATACCAACAGCCACTCGCATAATCATATGTTGTGGGCGCTC 126805 >seq93 Length=1762202 Score = 102 bits (112), Expect = 2e-16 Identities = 158/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 101851 CATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGAT---TTGGC 101907 |||||||||||||| | |||||| | | ||||| ||| ||| | | | || || Sbjct 1531899 CATCAAGAAGAAGGCCGACTGGGCTGTCAGATGGATCCAAGACAAGAGCTCTACCTTTGC 1531958 Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967 ||| | || || || || || || || || |||||||| ||||| | |||||||| Sbjct 1531959 TCAACGTCTCGTCGCATTCGCCGCTGTCGAGGGTATCTTCTTCAGTGGATCGTTCGCATC 1532018 Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027 || |||||| | ||||| | ||| | || ||||||| || | ||| || || | || Sbjct 1532019 TATCTTCTGGTTAAAGAAGCGTGGTCTCATGGCTGGTCTGACTTTCTCTAACGAACTTAT 1532078 Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 ||| | ||||| |||||||| ||||||||| ||| | || || Sbjct 1532079 CTCTCGTGACGAGGGTCTTCACACCGACTTTGCTTGCCTTCTCTT 1532123 >seq64 Length=368017 Score = 102 bits (112), Expect = 2e-16 Identities = 159/221 (72%), Gaps = 10/221 (5%) Strand=Plus/Plus Query 35387 AGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAA 35446 ||||||| || || | ||||| ||||| || ||||||||||| ||||||||||||||| Sbjct 95435 AGAGCAGTTGGCGACCTCGGACCAGTATATGGTTTCCAATGGCGGCATTTTGGTGCTGAA 95494 Query 35447 TATGATACCTGTTC-TTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAA---TAT 35502 || | | || || | || ||||| || || || | |||||| | || | ||| Sbjct 95495 TACG-TGGATGCTCAAACGGACTATACGGGGAAAGGCGTGGATCAACTTGCAGAAGTTAT 95553 Query 35503 ACTAAAGACCCTGAGAGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATC 35561 | ||| |||| |||| ||||| | || |||| || ||| | | || ||||||| Sbjct 95554 CCACAAG---CTGA-AGAACAATCCCTACGACCGAAGAATCATTCTCAGCGCGTGGAATC 95609 Query 35562 CTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATG 35602 | | |||||| | || |||||||| ||||||||||| ||| Sbjct 95610 CCAAGGATCTGAAGCTCATGGCTCTACCTCCATGCCATATG 95650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989581400795775