Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq124 141 1e-28 seq93 95.1 2e-14 >seq124 Length=198120 Score = 141 bits (156), Expect = 1e-28 Identities = 399/608 (66%), Gaps = 6/608 (1%) Strand=Plus/Plus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 |||||||| || || | |||| |||| | || || || | || |||||||| | | Sbjct 126195 TCGAACTCATCACCATAGACATCAGCCAAGCCTGGGCACTCGTTGGGGCACATCAAAGTC 126254 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308 |||||||| | | || || || ||||| ||||||||||| ||||| | || || Sbjct 126255 CACTCTCCATTCTTCTCAACACGCTTCATGAAGAGATCAGGGATCCACAAGGCGTAGAAG 126314 Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63368 ||||| | | || |||||| || || |||||| ||||| ||| || | | Sbjct 126315 AGATCACGAGCTCGGACTTCCTCTTTGCCGTGGTTCTTTCGGAGATCAAGGTACTCGAAG 126374 Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63428 | ||| | ||||| || || | ||| ||||| | | | || || | ||||| || || Sbjct 126375 ACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGTCTCTTGTTGCCACCT 126434 Query 63429 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63488 || || | |||||| || ||||| || | || | | ||| |||| |||||||| || Sbjct 126435 TGGTCGACGTATCTGGCAGTGTTGTTGAAGACACGTAGCATGGGAACGATACCGTTGGAG 126494 Query 63489 ATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAGAC 63546 | || || || || | || ||| | || | |||||||| | |||| |||| Sbjct 126495 TTTCCGTTCGTTCCCGCAATGTAGGCACCGGTAGCACGAATTCGGTGAACATTG--AGAC 126552 Query 63547 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTT 63606 | ||||| || || | || ||||| | ||||| || || || || ||||| || | Sbjct 126553 CGATTCCACCAGCATTCTTGGAGATCATGGCGCAAGTCTTCAATGTATCGTAGATACCGT 126612 Query 63607 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666 | |||||||| || |||||| | || || || ||| | ||| | | || | Sbjct 126613 CAATGCTATCCTCTTTCATGTCGATAAGGAAGCATGAAGAGAGTTGTGCTTGTGGTGTAC 126672 Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726 | || ||||| || || ||||| || || || || || | || | | ||||| | Sbjct 126673 CGGCGGCGAATAAAGTTGGGGAAGCATGGGTGAAGCACTTCTGGGACATCAAGTTGTATG 126732 Query 63727 TCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATG 63785 |||| || || | || ||||| || | ||||| || || || || ||||| | ||| Sbjct 126733 TCTCGATGGCAGCCTCAATATCTTCACCG-TGAATACCAACAGCCACTCGCATAATCATA 126791 Query 63786 TGCTGAGG 63793 || || || Sbjct 126792 TGTTGTGG 126799 >seq93 Length=1762202 Score = 95.1 bits (104), Expect = 2e-14 Identities = 194/285 (68%), Gaps = 5/285 (2%) Strand=Plus/Minus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || || ||||| | ||| ||| | || ||||||||||| || || ||||| || Sbjct 1531792 TATGTGTCGATGAGGAGAGAGTACGTCTCGGAATGAATGTTCTCCATCATGATCTGGAAG 1531733 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTT 33971 |||||||| || | |||||||| ||||| ||||| || ||| || || | | || Sbjct 1531732 CCGTAGAAGCAGCGAGCCTCGGGGATCTGAACTTCACCACTAAAGCGCTCGACAAGGTTC 1531673 Query 33972 TCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA---T 34028 || || || |||||||| || || || || || | || ||| || || || Sbjct 1531672 TCGTTGACGATTCCATCTGAAGCGGCGAAGAATGCAAGAACGTGTGAGATGAAGTAACGC 1531613 Query 34029 TTTTCGTC-TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 34087 | ||||| | | | | | || ||||| || | || ||| || || | ||| | ||||| Sbjct 1531612 TCATCGTCATTGAGCTTG-TTGTTCCAGTCGTGGAGATCCTTCGACAGATCAATCTCTTC 1531554 Query 34088 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 34132 | ||||| || |||||||| ||||| || ||||| | |||||| Sbjct 1531553 TGCGGTCCAGAAAGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 1531509 Score = 93.3 bits (102), Expect = 5e-14 Identities = 331/514 (64%), Gaps = 5/514 (1%) Strand=Plus/Minus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 ||||||||| ||||| ||||| || ||||| || || || ||||| | | ||| || || Sbjct 1532406 TTTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGTGAGATGTT 1532347 Query 33350 TTCCATGAAATCAAACGGATTGG-TAACATTGTAAAtttttttAAATCCCAATTCAGAAA 33408 |||||||| || || || |||| | || ||||| | || | || | || || Sbjct 1532346 CTCCATGAAGTCGAATGGGTTGGCTGAC-TTGTAGACCTTCTCGTTGCCAAGAGCAACAA 1532288 Query 33409 TCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA 33468 | | ||| || ||||| || || ||| ||||| | | | ||||| || | || Sbjct 1532287 GGAGACGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTTGGAGTTCATGCCGAGGA 1532228 Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 || ||||||||| | || | || || || ||||| || || | || || | Sbjct 1532227 GTGCGCAAGGAAGAGCCTCGGTCAAGAACTCCTGCTCAATCTCAACAGCCTCGGTAATGA 1532168 Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGA 33588 | |||| || | || || | || ||||| || | | || || | Sbjct 1532167 CGTCTTGGACGGCTTGCTTGCTTGGGCGGTGCTTCAAATGAGAGAAGAGAAGGCAAGCAA 1532108 Query 33589 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCA 33648 | ||| ||| ||||||||||| | | || | ||||||||| || || || || | || Sbjct 1532107 AGTCGGTGTGAAGACCCTCGTCACGAGAGATAAGTTCGTTAGAGAAAGTCAGACCAGCCA 1532048 Query 33649 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTT 33708 | || |||||||| || | ||| || || || ||||| ||||| |||||||| || | Sbjct 1532047 TGAGACCACGCTTCTTTAACCAGAAGATAGATGCGAACGATCCACTGAAGAAGATACCCT 1531988 Query 33709 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCACT 33765 | || || || || || | || | | || | | || |||| || ||||| Sbjct 1531987 CGACAGCGGCGAATGCGACGAGACGTTGAGCAAAGGTAGAGCTCTTGTCTTGGATCCATC 1531928 Query 33766 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33799 | |||||| ||||||||||| || | ||||| Sbjct 1531927 TGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 1531894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815986092400