Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq93 118 2e-21 seq124 109 8e-19 >seq93 Length=1762202 Score = 118 bits (130), Expect = 2e-21 Identities = 205/290 (71%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| || || ||||| | |||||| | |||||| Sbjct 1531509 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTCTGGACCGCAGAAGAGATTGATCTG 1531568 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| || |||| ||| | | | | ||| |||||| | || || || Sbjct 1531569 TCGAAGGATCTCCACGACTGGAACAACAAGCTCAATGACGATGAGCGTTACTTCATCTCA 1531628 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197 ||| || | || ||||| |||| || ||||||||||||||||| || | ||| || || Sbjct 1531629 CACGTTCTTGCATTCTTCGCCGCTTCAGATGGAATCGTCAACGAGAACCTTGTCGA-GCG 1531687 Query 125198 ATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATG 125255 || | | |||| | || || |||| ||| ||||| ||||| ||||| |||||| Sbjct 1531688 CTTTAGTGGTGAAGTTCA-GATCCCCGAGG-CTCGCTGCTTCTACGGCTTCCAGATCATG 1531745 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 || |||||| | || || || | ||||||| || || |||| ||||| Sbjct 1531746 ATGGAGAACATTCATTCCGAGACGTACTCTCTCCTCATCGACACATACAT 1531795 Score = 93.3 bits (102), Expect = 6e-14 Identities = 291/438 (66%), Gaps = 27/438 (6%) Strand=Plus/Plus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || ||||||||||| || ||||| |||||||| || || || | ||||| Sbjct 1531966 CTCGTCGCATTCGCCGCTGTCGAGGGTATCTTCTTCAGTGGATCGTTCGCATCTATCTTC 1532025 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||| | |||||||| || |||||| | || ||||| | |||||| |||| ||||| Sbjct 1532026 TGGTTAAAGAAGCGTGGTCTCATGGCTGGTCTGACTTTCTCTAACGAACTTATCTCTCGT 1532085 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT--ATCTGCGTCCC 125603 |||||||| || ||| |||||||| || || || || || | | | || ||| Sbjct 1532086 GACGAGGGTCTTCACACCGACTTTGCTTGCCTTCTCTTCTCTCATTTGAAGCACCG-CCC 1532144 Query 125604 GAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAA 125663 | ||| | | ||| | || | | ||| | ||||| || || ||| || Sbjct 1532145 AA--GCA-AGCAAGCCGTCCAA--GACGTCA------TTACCGAGGCTGTTGAGATTGAG 1532193 Query 125664 CAAGAGTTTCTAACCGAATCCCTACCGGTCAGCA-TGATTGGCATGAACTGCAAGCTAAT 125722 || ||||| | ||||| | || || | ||| | | |||||||||| ||| || || Sbjct 1532194 CAGGAGTTCTTGACCGAGGCTCTTCC-TTGCGCACTCCTCGGCATGAACTCCAACCTCAT 1532252 Query 125723 GTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC--CG-C 125777 | | ||||| ||||| || || |||||||| || |||| ||||| || Sbjct 1532253 GAAGCAATACATCGAGTTCGTTGCTGATCGTCTCCT-----TGTTGCTCTTGGCAACGAG 1532307 Query 125778 AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAG 125837 ||| | ||||| | || || || || |||||| | ||| ||||| | || ||| Sbjct 1532308 AAGGTCTACAAGTCAGCCAACCCATTCGACTTCATGGAGAACATCTCACTTGCCGGAAAG 1532367 Query 125838 ACCAACTTTTTCGAGAAG 125855 |||||||| ||||||||| Sbjct 1532368 ACCAACTTCTTCGAGAAG 1532385 >seq124 Length=198120 Score = 109 bits (120), Expect = 8e-19 Identities = 353/543 (65%), Gaps = 4/543 (1%) Strand=Plus/Minus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCAC 96864 ||| ||||| ||| ||| || | || || ||||| | | | ||| || || || Sbjct 126506 AACGAACGGAAACTCCAACGGTATCGTTCCCATGCTACGTGTCTTCAACAACACTGCCA- 126448 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 ||||||| || || ||||| || | ||||| ||| | ||| ||||| | || || | Sbjct 126447 GATACGTCGACCAAGGTGGCAACAAGAGACCAGGTGCTTTCGCCATCTACCTCGAGCCAT 126388 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||||| || || || || | | || | || || ||| ||| || || | | Sbjct 126387 GGCACGCAGATGTCTTCGAGTACCTTGATCTCCGAAAGAACCACGGCAAAGAGGAAGTCC 126328 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 |||| | || | || || || | ||| | || ||| | ||||||||||| || | Sbjct 126327 GAGCTCGTGATCTCTTCTACGCCTTGTGGATCCCTGATCTCTTCATGAAGCGTGTTGAGA 126268 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 | ||| | |||| | ||||||||| || || || || || | ||| || | Sbjct 126267 AGAATGGAGAGTGGACTTTGATGTGCCCCAACGAGTGCCCAGGCTTGGCTGATGTCTATG 126208 Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACGA 97163 | || ||||| ||||| ||| | ||||||| || ||| | || |||| | Sbjct 126207 GTGATGAGTTCGAGGCTCTATACGAGAAGTACGAGCGTGAAGGCAAGGGTCGCAAGACCA 126148 Query 97164 GTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 || | |||| |||| ||| | ||||| || ||| ||| |||||||| | ||| Sbjct 126147 -TCAAGGCACAGAAACTTTGGTACTCCATCTTGGAGGCACAGACCGAGACTGGGAATCCA 126089 Query 97224 TACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATC 97283 | ||| |||||||||||| | ||| | || |||||||| || | ||||| || Sbjct 126088 TTCATGCTCTACAAGGATGCTTGCAATAGAAAGAGCAACCAGAAGAACCTCGGCACAATT 126029 Query 97284 AAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTT 97343 ||||||| || ||||| || ||||| |||||| |||| || ||| || ||| Sbjct 126028 CGAAGCTCCAACCTCTGCACTGAGATTGTGGAGTACTGTGCTCCTGATGAGGTCGCTGTT 125969 Query 97344 TGC 97346 ||| Sbjct 125968 TGC 125966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057301035800