Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq93 104 2e-17 seq99 84.2 2e-11 >seq93 Length=1762202 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| ||||| || || || ||||| ||| | | ||||||| | || Sbjct 805803 ATGGAGAGTGGACTCTTTCTGGATATTATAATCCGAAAGAGTGCGGCCGTCTTCAAGCTG 805744 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || |||||| | ||||| |||||||||||| ||||| || || ||||| ||| || Sbjct 805743 CTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTT 805684 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 |||||||||| | || ||||||||||| || || || | ||| ||||| || || || Sbjct 805683 GCTCTTTACATTATCGATGGTATCGCTGGACTCAACCTCGAGGGTGATGGTCTTGCCAGT 805624 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || || || || ||||| ||| || ||| | ||||| | ||| Sbjct 806086 ATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTTCGTCCATCTTCGAGTTG 806027 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||||||| | |||| |||||||||||| || || ||||| ||||| || || Sbjct 806026 CTTGCCAGCGAAGATCAGGCGTTGTTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTT 805967 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || | || ||||| ||| |||||| || | ||| ||||| || || || Sbjct 805966 CGACTTAACGTTGTCGATGGTGTCGGAGGATTCTACCTCCAGGGTGATGGTCTTTCCAGT 805907 Query 15340 CAGAGTTTTTACAA 15353 ||| || || |||| Sbjct 805906 CAGGGTCTTGACAA 805893 >seq99 Length=1752785 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 15176 TTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15235 ||||| |||||||||||||| || | | | || || | ||| ||||||||| | ||| Sbjct 456626 TTTTGGATGTTGTAATCGCTCAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGATC 456567 Query 15236 AAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCT 15295 | |||||||||||| ||| |||||||| ||||| || ||| ||| || | || Sbjct 456566 AGGCGTTGTTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 456507 Query 15296 ATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAA 15354 || || ||||| || || || | ||| || || || || || || || || || || Sbjct 456506 ATAGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTAACGAA 456448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178295117905