Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq93 127 5e-24 seq62 102 2e-16 >seq93 Length=1762202 Score = 127 bits (140), Expect = 5e-24 Identities = 143/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || |||||||| |||||||| || || ||||| | |||||| Sbjct 805811 AGGACGAGATGGAGAGTGGACTCTTTCTGGATATTATAATCCGAAAGAGTGCGGCCGTCT 805752 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || |||||||| || || | | ||||| || || || || || || || ||| Sbjct 805751 TCAAGCTGCTTTCCAGCGAAGATCAAGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCC 805692 Query 104468 TGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||| ||||| |||||||| || | ||||||||| | || ||||| || || || || Sbjct 805691 TGAATC-TTGCTCTTTACATTATCGATGGTATCGCTGGACTCAACCTCGAGGGTGATGGT 805633 Query 104527 CTTACCAGT 104535 ||| ||||| Sbjct 805632 CTTGCCAGT 805624 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||||||||| ||||| || || ||||| || || || | ||| || || Sbjct 806307 GTGGACTCCTTCTGAATATTGTAGTCTGACAGGGTTCTGCCATCCTCCAATTGCTTACCG 806248 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | || ||||| || || || || || ||||| |||||||| | || Sbjct 806247 GCGAAGATAAGACGTTGCTGATCGGGTGGGATACCCTCCTTATCTTGAATCTTCGACTTA 806188 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| | ||| ||||| || || || ||||| || || | || Sbjct 806187 ACGTTGTCGATTGTGTCGGATGATTCAACCTCAAGAGTGATGGTCTTTCCGGTCAAGGTC 806128 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 806127 TTGACGAAGATCTGCAT 806111 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| || ||||| | || | ||| || || | ||| || ||| Sbjct 806535 GTTGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGACCATCCTCCAATTGCTTACCA 806476 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||| || ||||| || || || || |||||||||||||||| || Sbjct 806475 GCAAAGATCAATCGCTGCTGGTCAGGTGGAATACCCTCCTTATCCTGAATCTTTGACTTG 806416 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || | || || || | ||| || ||||| ||||| | || Sbjct 806415 ACATTGTCAATGGTGTCTGACGACTCCACTTCCAATGTGATTGTCTTGCCAGTCAAAGTC 806356 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 806355 TTGACAAAGATCTGCAT 806339 >seq62 Length=1271336 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 |||||||| || ||||| || || || | || || || ||||| ||||||||||| || Sbjct 898283 TTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATC 898342 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 | | ||| || || || || ||||| || || ||||| ||||| | || || || || Sbjct 898343 AATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 898402 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | |||||||| | || ||||| || || || ||||| || ||||| || || || || Sbjct 898403 ATCGTATCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 898461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395375780140