Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq124 145 1e-29 seq93 98.7 1e-15 >seq124 Length=198120 Score = 145 bits (160), Expect = 1e-29 Identities = 619/967 (64%), Gaps = 16/967 (2%) Strand=Plus/Plus Query 62892 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62951 |||| || |||| || ||||| || ||||||| || | | || | | |||||| Sbjct 125949 GCAAGGGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCACAGTACTCCACAATCTCA 126008 Query 62952 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63011 ||||| || || | || || || | || | || || |||||| | || || Sbjct 126009 GTGCAGAGGTTGGAGCTTCGAATTGTGCCGAGGTTCTTCTGGTTGCTCTTTCTATTGCAA 126068 Query 63012 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63071 |||||||| || || ||||||||| | ||||| || |||| | || | || | | | Sbjct 126069 GCATCCTTGTAGAGCATGAATGGATTCCCAGTCTCGGTCTGTGCCTCCAAGATGGAGTAC 126128 Query 63072 CAGACGACTC-GAGCCTTTATTATAGATTTGTATC--TCCTTTCTCTTTCGTA--TAGTG 63126 || | | || | ||||| || | || | | | | ||| | ||||| | | Sbjct 126129 CAAA-GTTTCTGTGCCTTGATGGTC--TTGCGACCCTTGCCTTCACGCTCGTACTTCTCG 126185 Query 63127 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 63186 |||| | | |||||||| || || | |||| |||| || || || || | || | Sbjct 126186 TATAGAGCC--TCGAACTCATCACCATAGACATCAGCCAAGCCTGGGCACTCGTTGGGGC 126243 Query 63187 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63246 ||||||| | ||||||||| | | || || || ||||| ||||||||||| ||||| | Sbjct 126244 ACATCAAAGTCCACTCTCCATTCTTCTCAACACGCTTCATGAAGAGATCAGGGATCCACA 126303 Query 63247 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63306 || || ||||| | | || |||||| || || |||||| ||||| | Sbjct 126304 AGGCGTAGAAGAGATCACGAGCTCGGACTTCCTCTTTGCCGTGGTTCTTTCGGAGATCAA 126363 Query 63307 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63366 || || | | | ||| | ||||| || || | ||| ||||| | | | || || | | Sbjct 126364 GGTACTCGAAGACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGTCTCT 126423 Query 63367 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63426 |||| || || || || | |||||| || ||||| || | || | | ||| |||| | Sbjct 126424 TGTTGCCACCTTGGTCGACGTATCTGGCAGTGTTGTTGAAGACACGTAGCATGGGAACGA 126483 Query 63427 TACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACT 63484 ||||||| || | || || || || | || ||| || | |||||||| | Sbjct 126484 TACCGTTGGAGTTTCCGTTCGTTCCCGCAATGTAGGCACCGGTAGCACGAATTCGGTGAA 126543 Query 63485 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544 |||| ||||| ||||| || || | || ||||| | ||||| || || || || Sbjct 126544 CATTG--AGACCGATTCCACCAGCATTCTTGGAGATCATGGCGCAAGTCTTCAATGTATC 126601 Query 63545 ATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63604 |||||||| || |||||||| || |||||| | || || || ||| | ||| Sbjct 126602 GTAGATACCGTCAATGCTATCCTCTTTCATGTCGATAAGGAAGCATGAAGAGAGTTGTGC 126661 Query 63605 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63664 | || || || ||||| || || ||||| || || || || || | || | Sbjct 126662 TTGTGGTGTACCGGCGGCGAATAAAGTTGGGGAAGCATGGGTGAAGCACTTCTGGGACAT 126721 Query 63665 TAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACAC 63723 | ||||| ||||| || || | || ||||| || | ||||| || || || || | Sbjct 126722 CAAGTTGTATGTCTCGATGGCAGCCTCAATATCTTCACCG-TGAATACCAACAGCCACTC 126780 Query 63724 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATT 63783 |||| | ||| || || || | || |||||| || | | | ||| ||| Sbjct 126781 GCATAATCATATGTTGTGGGCGCTCGCAGATCTTTCCGTCCAGGCGGAGGAGGTATGATC 126840 Query 63784 TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCG 63843 || | ||| || || || || || | ||| ||||| || || || | |||| | | Sbjct 126841 GCTCGAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCCCGGTCATAGACAATAGCGG 126900 Query 63844 AGTTGAG 63850 ||||||| Sbjct 126901 AGTTGAG 126907 >seq93 Length=1762202 Score = 98.7 bits (108), Expect = 1e-15 Identities = 332/514 (65%), Gaps = 5/514 (1%) Strand=Plus/Minus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||||||||| ||||| ||||| || ||||| || || || ||||| | | ||| || || Sbjct 1532406 TTTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGTGAGATGTT 1532347 Query 33072 TTCCATGAAATCAAACGGATTGG-TAACATTATAAAtttttttAAATCCCAATTCAGAAA 33130 |||||||| || || || |||| | || || || | || | || | || || Sbjct 1532346 CTCCATGAAGTCGAATGGGTTGGCTGAC-TTGTAGACCTTCTCGTTGCCAAGAGCAACAA 1532288 Query 33131 TCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 33190 | | ||| || ||||| || || ||| ||||| | | | ||||| || | | Sbjct 1532287 GGAGACGATCAGCAACGAACTCGATGTATTGCTTCATGAGGTTGGAGTTCATGCCGAGGA 1532228 Query 33191 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 33250 || ||||||||| | || | || || || ||||| || || || || || | Sbjct 1532227 GTGCGCAAGGAAGAGCCTCGGTCAAGAACTCCTGCTCAATCTCAACAGCCTCGGTAATGA 1532168 Query 33251 TAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGA 33310 | |||| || | || || | ||| ||||| || | | || || | Sbjct 1532167 CGTCTTGGACGGCTTGCTTGCTTGGGCGGTGCTTCAAATGAGAGAAGAGAAGGCAAGCAA 1532108 Query 33311 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 33370 | ||| ||| ||||||||||| | | || |||||||| || || || || || | || Sbjct 1532107 AGTCGGTGTGAAGACCCTCGTCACGAGAGATAAGTTCGTTAGAGAAAGTCAGACCAGCCA 1532048 Query 33371 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTT 33430 | || |||||||| || | ||| || || || ||||| |||||| |||||||| || | Sbjct 1532047 TGAGACCACGCTTCTTTAACCAGAAGATAGATGCGAACGATCCACTGAAGAAGATACCCT 1531988 Query 33431 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCACT 33487 | || || || || || | || | | || | | || |||| || ||||| Sbjct 1531987 CGACAGCGGCGAATGCGACGAGACGTTGAGCAAAGGTAGAGCTCTTGTCTTGGATCCATC 1531928 Query 33488 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33521 | |||||| ||||||||||| || | ||||| Sbjct 1531927 TGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 1531894 Score = 91.5 bits (100), Expect = 2e-13 Identities = 193/285 (68%), Gaps = 5/285 (2%) Strand=Plus/Minus Query 33574 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33633 || || ||||| | ||| ||| | || ||||||||||| || || ||||| || Sbjct 1531792 TATGTGTCGATGAGGAGAGAGTACGTCTCGGAATGAATGTTCTCCATCATGATCTGGAAG 1531733 Query 33634 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTT 33693 |||||||| || | |||||||| ||||| ||||| || ||| || || | | || Sbjct 1531732 CCGTAGAAGCAGCGAGCCTCGGGGATCTGAACTTCACCACTAAAGCGCTCGACAAGGTTC 1531673 Query 33694 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA---T 33750 || || || ||||| || || || || || || | || ||| || || || Sbjct 1531672 TCGTTGACGATTCCATCTGAAGCGGCGAAGAATGCAAGAACGTGTGAGATGAAGTAACGC 1531613 Query 33751 TTTTCGTC-TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 33809 | ||||| | | | | | || ||||| || | || ||| || || | ||| | ||||| Sbjct 1531612 TCATCGTCATTGAGCTTG-TTGTTCCAGTCGTGGAGATCCTTCGACAGATCAATCTCTTC 1531554 Query 33810 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854 | ||||| || |||||||| ||||| || ||||| | |||||| Sbjct 1531553 TGCGGTCCAGAAAGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 1531509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622945603697800