Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12-
03] 205 sequences; 69,693,031 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1 140 2e-28
seq93 91.5 1e-13
>seq1
Length=9468
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 4618 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 4559
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 4558 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4524
>seq93
Length=1762202
Score = 91.5 bits (100), Expect = 1e-13
Identities = 160/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | | ||| | ||||||||| ||||| |||||||||||| ||||| ||
Sbjct 806566 ACCACCACGGAGACGGAGCACCAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCT 806507
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
||| ||| | || || ||||| || || ||||| || | || || || || | ||
Sbjct 806506 CAAGGTACGACCATCCTCCAATTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGTGG 806447
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCT--CCACTTTCA 38267
| || || || ||| ||| ||| ||| ||||| | | || ||| | || ||
Sbjct 806446 AATACCCTCCTTATCCTGAATCTTTGACTTGACATTGTCAATGGTGTCTGACGAC--TCC 806389
Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
||||| ||||| || || || || ||||| || || || || |||||||||
Sbjct 806388 ACTTCCAATGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCATG 806338
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | ||| | ||||| || || ||| |||||| ||||||||||| || |||
Sbjct 806337 CCACCACGAAGACGGAGGACCAAGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCTGAC 806278
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | | || || ||||| || ||||| || || || ||||| ||||||| |||
Sbjct 806277 AGGGTTCTGCCATCCTCCAATTGCTTACCGGCGAAGATAAGACGTTGCTGATCGGGTGGG 806218
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| || || || || ||| || ||| || || | || || || ||||||
Sbjct 806217 ATACCCTCCTTATCTTGAATCTTCGACTTAACGTTGTCGATTGTGTCGGATGATTCAACC 806158
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || || || |||||||| || ||||| ||||||||
Sbjct 806157 TCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 806111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334946363155355
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |