Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq124 140 4e-28 seq93 91.5 2e-13 >seq124 Length=198120 Score = 140 bits (154), Expect = 4e-28 Identities = 618/968 (64%), Gaps = 18/968 (2%) Strand=Plus/Plus Query 62747 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62806 |||| || |||| || ||||| || ||||||| || | | || | | |||||| Sbjct 125949 GCAAGGGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCACAGTACTCCACAATCTCA 126008 Query 62807 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 62866 ||||| || || | || || || | || | || || |||||| | || || Sbjct 126009 GTGCAGAGGTTGGAGCTTCGAATTGTGCCGAGGTTCTTCTGGTTGCTCTTTCTATTGCAA 126068 Query 62867 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 62926 |||||||| || || ||||||||| | ||||| || |||| | || | || | | | Sbjct 126069 GCATCCTTGTAGAGCATGAATGGATTCCCAGTCTCGGTCTGTGCCTCCAAGATGGAGTAC 126128 Query 62927 CAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTT---TTCTCTTTCGTA--TAGT 62980 || | | || | ||||| || | ||| | ||| ||| | ||||| | Sbjct 126129 CAAA-GTTTCTGTGCCTTGATGGTC---TTGCGACCCTTGCCTTCACGCTCGTACTTCTC 126184 Query 62981 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGA 63040 ||||| | | |||||||| || || | |||| ||| || || || || | || Sbjct 126185 GTATAGAGCC--TCGAACTCATCACCATAGACATCAGCCAAGCCTGGGCACTCGTTGGGG 126242 Query 63041 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63100 |||||||| | ||||||||| | | || || || ||||| ||||||||||| ||||| Sbjct 126243 CACATCAAAGTCCACTCTCCATTCTTCTCAACACGCTTCATGAAGAGATCAGGGATCCAC 126302 Query 63101 AGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCG 63160 | || || ||||| | | || |||||| || || |||||| ||||| Sbjct 126303 AAGGCGTAGAAGAGATCACGAGCTCGGACTTCCTCTTTGCCGTGGTTCTTTCGGAGATCA 126362 Query 63161 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGT 63220 ||| || | | | ||| | ||||| || || | ||| ||||| | | | || || | Sbjct 126363 AGGTACTCGAAGACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCTGGTCTC 126422 Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 ||||| || || || || | |||||| || ||||| || | || | | ||| |||| Sbjct 126423 TTGTTGCCACCTTGGTCGACGTATCTGGCAGTGTTGTTGAAGACACGTAGCATGGGAACG 126482 Query 63281 ATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTAC 63338 ||||| ||||| | || || || || | || ||| || | |||||||| | Sbjct 126483 ATACCGTTGGAGTTTCCGTTCGTTCCCGCAATGTAGGCACCGGTAGCACGAATTCGGTGA 126542 Query 63339 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 63398 |||| ||||| ||||| || || | || ||||| | ||||| || || |||| Sbjct 126543 ACATTG--AGACCGATTCCACCAGCATTCTTGGAGATCATGGCGCAAGTCTTCAATGTAT 126600 Query 63399 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 63458 | ||||| || || || ||||| || |||||| | || || || ||| | ||| Sbjct 126601 CGTAGATACCGTCAATGCTATCCTCTTTCATGTCGATAAGGAAGCATGAAGAGAGTTGTG 126660 Query 63459 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAA 63518 | || || || ||||| || || ||||| || || || || || | || | Sbjct 126661 CTTGTGGTGTACCGGCGGCGAATAAAGTTGGGGAAGCATGGGTGAAGCACTTCTGGGACA 126720 Query 63519 GTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACA 63577 | ||||| ||||| || || | || ||||| || | ||||| || || || || Sbjct 126721 TCAAGTTGTATGTCTCGATGGCAGCCTCAATATCTTCACCG-TGAATACCAACAGCCACT 126779 Query 63578 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGAT 63637 ||||| | ||| || || || | || |||||| || | | | ||| ||| Sbjct 126780 CGCATAATCATATGTTGTGGGCGCTCGCAGATCTTTCCGTCCAGGCGGAGGAGGTATGAT 126839 Query 63638 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 63697 || | ||| || || || || || | ||| ||||| || || || | |||| | Sbjct 126840 CGCTCGAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCCCGGTCATAGACAATAGCG 126899 Query 63698 GAGTTGAG 63705 |||||||| Sbjct 126900 GAGTTGAG 126907 >seq93 Length=1762202 Score = 91.5 bits (100), Expect = 2e-13 Identities = 227/339 (67%), Gaps = 13/339 (4%) Strand=Plus/Minus Query 32881 TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTA---CTA-TCTTTAACATATGTA 32936 ||||||| || ||||| |||||||| | | | || || || || | ||||| Sbjct 1531842 TTGTCTCGATGGCATTGAAGAGATA----TGTGCGTTGGGCCTGCTCCTTGATGTATGTG 1531787 Query 32937 TCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG 32996 || || | ||| ||| | || ||||||||||| || || || || || |||||| Sbjct 1531786 TCGATGAGGAGAGAGTACGTCTCGGAATGAATGTTCTCCATCATGATCTGGAAGCCGTAG 1531727 Query 32997 AAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTC 33056 ||||| | |||||||| ||||| ||||| || ||| || || | | || || || Sbjct 1531726 AAGCAGCGAGCCTCGGGGATCTGAACTTCACCACTAAAGCGCTCGACAAGGTTCTCGTTG 1531667 Query 33057 ACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA---TTTTTCG 33113 || ||||| || || || || || || | || ||| || || || | ||| Sbjct 1531666 ACGATTCCATCTGAAGCGGCGAAGAATGCAAGAACGTGTGAGATGAAGTAACGCTCATCG 1531607 Query 33114 TC-TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGT 33172 || | | | | | || ||||| || | || ||| || || | ||| | ||||| | || Sbjct 1531606 TCATTGAGCTTG-TTGTTCCAGTCGTGGAGATCCTTCGACAGATCAATCTCTTCTGCGGT 1531548 Query 33173 CCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 ||| || |||||||| ||||| || ||||| | |||||| Sbjct 1531547 CCAGAAAGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 1531509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630376318000