Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialocephala_20subalpina_20[genbank_20GCA_5F900073065.1_202016-12- 03] 205 sequences; 69,693,031 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq62 91.5 3e-13 seq158 87.8 4e-12 >seq62 Length=1271336 Score = 91.5 bits (100), Expect = 3e-13 Identities = 141/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTC----TCGCGGTATGATGTGGAGCGTTCTA 218572 ||||||| | ||||||| |||||||||||| | || | | || | ||||| | Sbjct 375982 TGACTTCGTGAACAAGGAACTCATTCTTTTCAGTATGGCCG-ACAATCTT---CGTTCCA 375927 Query 218573 TTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCA 218632 ||||| ||| | ||||| ||||||| ||| | ||| || | | || |||| Sbjct 375926 TTCCCTCCGTCATTGATGGTTTCAAGCCTGGACAGAGAAAGGTCATGTACGCTTGTTTCA 375867 Query 218633 AGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTT 218692 |||| |||||| || ||| || ||||||| | | || |||||||||| || |||| Sbjct 375866 AGCGCAACCTGACTCGAGATATGAAGGTCGTTGAATTGGCTGGTTATGTCTCAGAAAACA 375807 Query 218693 CTGGCTACCATCACGGTGA 218711 ||| ||||||||||||||| Sbjct 375806 CTGCCTACCATCACGGTGA 375788 >seq158 Length=868126 Score = 87.8 bits (96), Expect = 4e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| || || ||||||||||| || ||| ||||| | ||| | | || Sbjct 377612 CTCACTCGCGTATGTTAGGTCTTTCTGGTGGTCAGCGTGTCAAGGTCGTCTTGGCTGCTT 377553 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 |||| |||||||| |||||| |||||||||| ||||||||||||||||| |||| ||| Sbjct 377552 GCTC-GTGGCAACGTCCTCACTTGATCGTTCTTGACGAGCCTACCAACTACTTGGATCGC 377494 Query 280821 GA 280822 || Sbjct 377493 GA 377492 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || |||||||| || |||| ||| | || ||||||| ||||||||||| ||| Sbjct 379014 GGCGAGGATCTTTGCAACTGCACATTCAACTTGGCCTATGGTGCTAAGATTCTGCTCAAC 378955 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| | | |||||||| | || ||||||||| ||||||||| || | Sbjct 378954 CAAACCCATCTCCGCCTGAAGCGTGGTCAGCGATATGGTCTCTGCGGTCCCAACGGTTCC 378895 Query 279465 GGTAAGAGCACTCTAATGCGCGCCAT 279490 || ||| |||||| ||||||||||| Sbjct 378894 GGAAAGTCCACTCTCATGCGCGCCAT 378869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834100322405